NONHSAT054018
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054018 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1783 nt |
Genomic location |
chr17-:43222901..43224683 |
Exon number |
1 |
Exons |
43222901..43224683 |
Genome context |
|
Sequence |
000001 CTCACCCGCA GAGGCCCTTC CTCATCAGTG GGCGCTGGGC AAGACTGGGA GGGAAGCATG GAGGAGGCCT TGCTCCGAAA 000080
000081 CTTGCTGCAG GGGATTCTGG CGCAGGGCTG GGGGGGCCGA TTCCCCCGGG GGCGTAGTTT CTCAGAGAGA AATTCTCTAG 000160 000161 ACCCAAGCCC CCAGCCCTCC ATAAACAGGG ACTGAGAGGA CCCAGAGAAC CCTCCATACC AGTCACTGAG GCCTAAAATC 000240 000241 TTGGCGCCCT TTCCACTTCT CCTTCGCCAC ACACCCAGTG ACCCTTTCTT CTTATTGCTT CCTtaatagc atccctgaca 000320 000321 ttccagcacg tttgcactgt gtacctttta cgcacagagc catgtgacct caccacagcc tggcaagtta gacacgatag 000400 000401 gaatgagtgt ctccatttta cagataaggc atctctaaga cactggaaaa taagtgactt gtccaaggtc acatgacaac 000480 000481 catggggcag ttctggctag agcgctggtc tttgtgaccc cccccgtgcc atttTTCTTT CTGTCACAAA CACAAAACCC 000560 000561 ATTTTTTCTT AAAATCGGGG AATACTCTGG ATTTCGTTCT Ttttattccc aacaacttca accttattca gcccctatat 000640 000641 cacttggcaa acaggagggt acaaagaggg gtgggatgcc attcttgcct tcaagttgct cctggactgt ggagaggcca 000720 000721 tcagaccaca gccagcctaa atggcaagtg agggaaatcc tggtgggagc tgatgagccg agtgcatggg agctgggaat 000800 000801 tatggacaag tgtcaggagc aagtgacttc ctggctggct ctgaaggatg aagagctttc aggcaaagtg gcacgaagag 000880 000881 gggcatttta ggaagcccaa gcatcatgtg ccaggaaagg gctagtctgg gacttcggtg gctctgggca gtgtgagata 000960 000961 tcgggggtgg GGGCCAGTGG TGATGGGCAT GGCCAATGTA GATGCCTCTA AGGGGAGCCG CAAGCACGCG GGCCTCTGGG 001040 001041 CACAGCTATA TGTTCTGAAA ATGAACACCT TCATTTGTTT TCTCTGGGCT TCCAAGAATT CGGGTCCACC TGAAAAGTTC 001120 001121 GCCACTCCGT GTGGCTTCAT CCCTTAGGAG GCTTCCTGAG AGCAAGAACT GCCCCTCAGA GCACTCCTGG AGGAAAAAGG 001200 001201 GATTTTGCAG ATAACTTGGT TATCACAGAG AGTTATCACA GAGACCTCCA AATTGTTACC CCATCTTCAG ACTCCAGAGG 001280 001281 ATTCTGGGGT ACCCCCAGTC AGGGCATTTG GAAGGCACTG CTGAGCCTAG CCTCAGTGTC CTGGACTGGG CTCCACTGTA 001360 001361 TGGTCTCGTG TTCTATTGGG GGAGAGGTGG ACTGACGAAT AGGTTGTGGA ATTCTAGAAT TCTGTCAAGG GGCCAGGCAA 001440 001441 Ccttactgtt agctgggttc taaccctttg ccaggcattt aacatgcccc atcactggta aaccccagga ctgccttatg 001520 001521 aaaaagagat caactctatt tcacaaaaga ggccacccaa ggccagagca gttaagaatc ttccccaagg gggccgggcg 001600 001601 cggtggctca cgcctgtaat cctagcactt tgggaggccg aggtgggcgg atcacgaggt caggagatcg agaccatcct 001680 001681 ggctaacatg gtgaaacccc atctctacta aaaatacaaa aaattagccg ggcgtggtgg cccccgcctg tagtcccagc 001760 001761 tacttccggg aggctgaggc agg |
Predicted Small Protein
Name | NONHSAT054018_smProtein_1517:1618 |
Length | 34 |
Molecular weight | 3800.453 |
Aromaticity | 0.0606060606061 |
Instability index | 74.6848484848 |
Isoelectric point | 12.307434082 |
Runs | 5 |
Runs residual | 0.0326086956522 |
Runs probability | 0.0313018901255 |
Amino acid sequence | MKKRSTLFHKRGHPRPEQLRIFPKGAGRGGSRL |
Secondary structure | LLLLLLLLLLLLLLLHHHLEEELLLLLLLLLLL |
PRMN | - |
PiMo | - |