NONHSAT054152
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054152 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1263 nt |
Genomic location |
chr17+:43662370..43665981 |
Exon number |
2 |
Exons |
43662370..43663340,43665690..43665981 |
Genome context |
|
Sequence |
000001 CGGGAAGGGG CGGGCGCAAT GGGCGCAGTG GGGGCGGCTG GGGCCGGGTG GGGAGGCCAG AGGGGCAGGG CAGGAGGGGC 000080
000081 CCGGCCTGCG GAAGCGGTTG GAGGGAGAAG GCTCAATCCG AATGGCTGGG GCCCCACTGC GGATCGCCTT CAGCCTCCAT 000160 000161 CTCGTTTCTT CCGTTAACGG AGCGCGGTCA CGTGAGCTGA GCAGCCTACG AGCCTGGGAC GGGGCGAGGT GGCGCAGCGG 000240 000241 CTGCTTGGGG GAGCGCGGGA GCATTGAGTC GGGGGCAGAG AGCCTGGGGC GCCGGGGCTG GGCGCAGCGA GGCGCGGCTG 000320 000321 GACTCCGGGC TTGGTGGCGC GGTTGAGAGA GACGCGCAGC TGGCGAAATG CCCCGCGTCT AAGGCCTTCG GAGACCATAG 000400 000401 TCTCCGCGGA CCCCTGGCTG GAGCCCAAAG CCGGTCGGAC CTCCTCCCTG CGTCTCCCCT TCCGCGGCTC GGAGAGGAAG 000480 000481 GCAGGAGAGC CCCCAAATAT TCCCCTCCCG CCCTCTAGGG AAACTGAAGC TGAAAGAACC AGCGAAAGAA AAAAAAGTCT 000560 000561 CGGAGTGGGG CGGCCCGAGC GACCTAAGGG ACGGGGCAGT GGCAGCGACC GAGGGAAATT AGTCGGGGTG GGGGAACAGG 000640 000641 GAGACAAGCC CCCAGAATTT AGGAAACTCC TAAATtctac taaaaataca aaaattacct gggcatggtg gcgggtgcct 000720 000721 gtaatcccag ctacttggga ggctgaggca ggagaatcgc ttgaacccgg gaggcggagg ttgcggtgag ccaagatcct 000800 000801 gccattgcac tccagcctgg agaacaagag tgaaactacg tctcaaaaaa aaagagaaTA GAGAGCCATG CAGTCCACGC 000880 000881 GGGATTGTGA GCTGTGGTGT GAGAGGGTGA AGCCAGAGAA CAAGGCGGCG CTGGAGGCGT GGGTCAGGCA GACAGGCATC 000960 000961 GCCTGGTGCA Gttcattcac tctagctatg tggggaggac attcaggcag tgtgtggaga agtccaggta gtaagccaat 001040 001041 gaagtcttca accaatattc agtgaggaac tacagcctgc caacaaccaa cgagtgacct tgaatgcata ttttctccca 001120 001121 attgagtctt cagataagag tgcagcccca ggccactgct tgactgaaac atcccaagag aactgagcag aaccacccag 001200 001201 ctaagtccct cccagattcc tgacccacag aaagtgtgat ataataaatg ttttttgttt taa |
Predicted Small Protein
Name | NONHSAT054152_smProtein_1103:1162 |
Length | 20 |
Molecular weight | 2168.5178 |
Aromaticity | 0.0526315789474 |
Instability index | 110.315789474 |
Isoelectric point | 9.51995849609 |
Runs | 5 |
Runs residual | 0.0123839009288 |
Runs probability | 0.0179120296767 |
Amino acid sequence | MHIFSQLSLQIRVQPQATA |
Secondary structure | LLHHHHLLLEEEELLLLLL |
PRMN | - |
PiMo | - |