NONHSAT054287
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054287 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
765 nt |
Genomic location |
chr17-:45234596..45266788 |
Exon number |
6 |
Exons |
45234596..45234750,45235572..45235669,45247283..45247408,45249283..45249430,45258928..45259003,45266627..45266788 |
Genome context |
|
Sequence |
000001 AACGGTTTTC TCTCTCGTCG ACCAACCTCG GGTATTTCCG ACTCCCTTCG GGCTTTTCCG TCTGGTTCCC GCTCGGCTTT 000080
000081 CTCCACTTCG GGTATTCCCG TGTCCCGCTC GGAAGCACTC GGCAATCGCT CGGCCTCCCC CATCCCCCGG TAACGGTCGC 000160 000161 TGGCTGCTAT ATGGCAAGCA CTAAACCACT ATGCTTACCG AGATGCGGTT TTCCTCGCAG AACGCCTTTA TGCAGAAGta 000240 000241 cactcagaag aagccttgtt tttactggca acctgttatT ACCGCTCAGG AAAGGCATAT AAAGCATATA GACTCTTGAA 000320 000321 AGGACACAGT TGTACTACAC CGCAATGCAA ATACCTGCTT GCAAAATGTT GTGTTGATCT CAGCAAGCTT GCAGAAGGGG 000400 000401 AACAAATCTT ATCTGGTGGA GTGTTTAATA AGCAGAAAAG CCATGATGAT ATTGTTACTG AGTTTGGTGA TTCAGCTTGC 000480 000481 TTTACTCTTT CATTGTTGGG ACATGTATAT TGCAAGACAG ATCGGCTTGC CAAAGGATCA GAATGTTACC AAAAGAGCCT 000560 000561 TAGTTTAAAT CCTTTCCTCT GGTCTCCCTT TGAATCATTA TGTGAAATAG GTGAAAAGCC AGATCCTGAC CAAACATTTA 000640 000641 AATTCACATC TTTACAGAAC TTTAGCAACT GTCTGCCCAA CTCTTGCACA ACACAAGTAC CTAATCATAG TTTATCTCAC 000720 000721 AGACAGCCTG AGACAGTTCT TACGGAAACA CCCCAGGACA CAATT |
Predicted Small Protein
Name | NONHSAT054287_smProtein_170:301 |
Length | 44 |
Molecular weight | 4840.897 |
Aromaticity | 0.046511627907 |
Instability index | 73.4325581395 |
Isoelectric point | 11.8826293945 |
Runs | 5 |
Runs residual | 0.0410243010191 |
Runs probability | 0.0171877760113 |
Amino acid sequence | MASTKPLCLPRCGFPRRTPLCRSTLRRSLVFTGNLLLPLRKGI |
Secondary structure | LLLLLLLLLLLLLLLLLLLLHHHHLLLEEEELLLLLLLLLLLL |
PRMN | - |
PiMo | - |