NONHSAT054307

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT054307

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1772 nt

Genomic location

chr17-:45532476..45569847

Exon number

7

Exons

45532476..45533520,45534050..45534159,45560358..45560456,45564129..45564250,45567532..45567661,45568381..45568558,45569760..45569847

Genome context

Sequence
000001 CGGCGGCCTT TGCGGGAACA AGATGGCAGC CCTCATACCT CAAGGGTTCT CTTGTTTATC GAGGGTTTTG GGCTGGTGGT 000080
000081 CTCGGCAGCC AGTTCTGGTG ACTCAGTCCG CAGCTATAGT TCCAGTAAGA ACTAAAAAAC GTTTCACATC TCCTATTTAT 000160
000161 CAACCTAAAT TTAAAACAGA AAAGGAGTTT ATGCAACATG CCCGGAAAGC AGGATTGGTT ATTCCTCCAG AAAAATCGGA 000240
000241 CCGTTCCATA CATCTGGCCT GTACAGCTGG TATATTTGAT GCCTATGTTC CTCCTGAGGG TGATGCACGC ATATCATCTC 000320
000321 TTTCAAAGGA GAGATGATAG AGAGAACTGA TAGAGAGAAC TGAACGAATG AAGAAGACTA TGGCATCACA AGTGTCATGG 000400
000401 AGTCTTGCTC TGTTACCCAG GCTGGAGTGC AGTGGCTCCA TCTCGGCCCA CTGCAGCCTC TGCCTCCCAG GTTCAAGTGA 000480
000481 TTCTCCTGCC TCAGCCTCCC GAGTAGCTGA GACTACAGAA TCCGGAGGAT AAAAGACTAT GATGCCAACT TTAAAATAAA 000560
000561 GGACTTCCCT GAAAAAGCTA AGGATATCTT TATTGAAGCT CACCTTTGTC TAAATAAGTT GGGCCCATGA GATGTGTGCT 000640
000641 CTGTATATTC CGGAGGTACA ATTTGCCAGT GTTTCCACAA TGGAACCAAT TGTTTTACAG TCTGTTCCAC ATGATCATTG 000720
000721 TAATAAGGTA TCAAGAGTCT GGTAAATTTG AATTAATTAT TATTTTGCAT AATATTCATT ACAATGTATC ATACATTCTT 000800
000801 TTTTAAAAAA CAGTCCTATA TTAGAATGTT ACTTGTCCCC CCCCTCAAGT TATTTGTACC CCAAGATACG GTTTTTATTG 000880
000881 TTGGCCTTAA AAAAAAAACT TAATGTTTGC TTTTTTCCTG TATGTTTTTC TTCATTTAGT ATGTTATTGT TTTATTCTCC 000960
000961 TCTGCATTTT AGGTTTCACC ATTACCCAAT GTGCCTTTAA ATACAGTTTT ACCACTTAAT TGAAGGTACA CATTCCAACT 001040
001041 GTGGAAGAAA TTGCAGCCAG CTTTAAGATT TTAAATGTTT TTGTGCAAAA AAACTTTTTA TTATGTAATT AATATTTATT 001120
001121 TTATTTTATT TTATTTTACT TTTTATTTAT TTATTTTTTT TGAGACAGAG TCTCACTCTG TCACCCAGGC TGGAATGCAG 001200
001201 TGGCATGATC TCGGCTCACA GCAACCTCTG CCTCCCGGGT TCAAGCAATT CTCCTGCCTT AGCCTCCTGA GTAGCTGGGA 001280
001281 TTACAGGTGC CCACTATCAC GCCCGACTAA TTTTTCTATT TTTTAGTAGA GACGGGGTTT TTTCTGTGTA TTTTTGCTTA 001360
001361 TAGTATATAC TTACGAAAAA GTTGAATCGT TTTGCTTATA TTTTTTGTTT GCTTTTGAAA ATTACACAGC ATCTTTTGTG 001440
001441 TGTCAATAAA TTGTGTTTCT GCTGTATTTT TAATAGATAC TTGGTCTGTA ATACAGAATA TCATGAGATT CAACAAACTG 001520
001521 TAAATTTAAT TAAGCAACCC TTTGTGGTTG AAGGGCCTAG TTTGGTGTCT GGCATTTAGT ATACACTGCT AGCATCTGTG 001600
001601 TAAAAGTGTG TGAACATTTT GGAAGCTTCA AGAAATACAT TGTGTGAAAT TGTCCTCTAG AACTTACACT GTATTAGCTG 001680
001681 TATGTGAGAT TGCTCATAAC TCTATATTTT GTTAGGTACA CTGTGTTACC CTTAAAAAAA TCTTTGCTAT TCTTTCTAGT 001760
001761 AAAAAAAATA TT
[back to top]

Predicted Small Protein

Name NONHSAT054307_smProtein_626:805
Length 60
Molecular weight 7354.73
Aromaticity 0.203389830508
Instability index 65.003559322
Isoelectric point 9.18341064453
Runs 11
Runs residual 0.0419841393251
Runs probability 0.0668288609465
Amino acid sequence MRCVLCIFRRYNLPVFPQWNQLFYSLFHMIIVIRYQESGKFELIIILHNIHYNVSYILF
Secondary structure LEEEEEEEEELLLLLLLLHHHHHHHHHHHEEEEEEELLLLEEEEEEHHHLLLLLEEEEL
PRMN LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHH
PiMo oooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTT