NONHSAT054307
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054307 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1772 nt |
Genomic location |
chr17-:45532476..45569847 |
Exon number |
7 |
Exons |
45532476..45533520,45534050..45534159,45560358..45560456,45564129..45564250,45567532..45567661,45568381..45568558,45569760..45569847 |
Genome context |
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Sequence |
000001 CGGCGGCCTT TGCGGGAACA AGATGGCAGC CCTCATACCT CAAGGGTTCT CTTGTTTATC GAGGGTTTTG GGCTGGTGGT 000080
000081 CTCGGCAGCC AGTTCTGGTG ACTCAGTCCG CAGCTATAGT TCCAGTAAGA ACTAAAAAAC GTTTCACATC TCCTATTTAT 000160 000161 CAACCTAAAT TTAAAACAGA AAAGGAGTTT ATGCAACATG CCCGGAAAGC AGGATTGGTT ATTCCTCCAG AAAAATCGGA 000240 000241 CCGTTCCATA CATCTGGCCT GTACAGCTGG TATATTTGAT GCCTATGTTC CTCCTGAGGG TGATGCACGC ATATCATCTC 000320 000321 TTTCAAAGGA GAGATGATAG AGAGAACTGA TAGAGAGAAC TGAACGAATG AAGAAGACTA TGGCATCACA AGTGTCATGG 000400 000401 AGTCTTGCTC TGTTACCCAG GCTGGAGTGC AGTGGCTCCA TCTCGGCCCA CTGCAGCCTC TGCCTCCCAG GTTCAAGTGA 000480 000481 TTCTCCTGCC TCAGCCTCCC GAGTAGCTGA GACTACAGAA TCCGGAGGAT AAAAGACTAT GATGCCAACT TTAAAATAAA 000560 000561 GGACTTCCCT GAAAAAGCTA AGGATATCTT TATTGAAGCT CACCTTTGTC TAAATAAGTT GGGCCCATGA GATGTGTGCT 000640 000641 CTGTATATTC CGGAGGTACA ATTTGCCAGT GTTTCCACAA TGGAACCAAT TGTTTTACAG TCTGTTCCAC ATGATCATTG 000720 000721 TAATAAGGTA TCAAGAGTCT GGTAAATTTG AATTAATTAT TATTTTGCAT AATATTCATT ACAATGTATC ATACATTCTT 000800 000801 TTTTAAAAAA CAGTCCTATA TTAGAATGTT ACTTGTCCCC CCCCTCAAGT TATTTGTACC CCAAGATACG GTTTTTATTG 000880 000881 TTGGCCTTAA AAAAAAAACT TAATGTTTGC TTTTTTCCTG TATGTTTTTC TTCATTTAGT ATGTTATTGT TTTATTCTCC 000960 000961 TCTGCATTTT AGGTTTCACC ATTACCCAAT GTGCCTTTAA ATACAGTTTT ACCACTTAAT TGAAGGTACA CATTCCAACT 001040 001041 GTGGAAGAAA TTGCAGCCAG CTTTAAGATT TTAAATGTTT TTGTGCAAAA AAACTTTTTA TTATGTAATT AATATTTATT 001120 001121 TTATTTTATT TTATTTTACT TTTTATTTAT TTATTTTTTT TGAGACAGAG TCTCACTCTG TCACCCAGGC TGGAATGCAG 001200 001201 TGGCATGATC TCGGCTCACA GCAACCTCTG CCTCCCGGGT TCAAGCAATT CTCCTGCCTT AGCCTCCTGA GTAGCTGGGA 001280 001281 TTACAGGTGC CCACTATCAC GCCCGACTAA TTTTTCTATT TTTTAGTAGA GACGGGGTTT TTTCTGTGTA TTTTTGCTTA 001360 001361 TAGTATATAC TTACGAAAAA GTTGAATCGT TTTGCTTATA TTTTTTGTTT GCTTTTGAAA ATTACACAGC ATCTTTTGTG 001440 001441 TGTCAATAAA TTGTGTTTCT GCTGTATTTT TAATAGATAC TTGGTCTGTA ATACAGAATA TCATGAGATT CAACAAACTG 001520 001521 TAAATTTAAT TAAGCAACCC TTTGTGGTTG AAGGGCCTAG TTTGGTGTCT GGCATTTAGT ATACACTGCT AGCATCTGTG 001600 001601 TAAAAGTGTG TGAACATTTT GGAAGCTTCA AGAAATACAT TGTGTGAAAT TGTCCTCTAG AACTTACACT GTATTAGCTG 001680 001681 TATGTGAGAT TGCTCATAAC TCTATATTTT GTTAGGTACA CTGTGTTACC CTTAAAAAAA TCTTTGCTAT TCTTTCTAGT 001760 001761 AAAAAAAATA TT |
Predicted Small Protein
Name | NONHSAT054307_smProtein_626:805 |
Length | 60 |
Molecular weight | 7354.73 |
Aromaticity | 0.203389830508 |
Instability index | 65.003559322 |
Isoelectric point | 9.18341064453 |
Runs | 11 |
Runs residual | 0.0419841393251 |
Runs probability | 0.0668288609465 |
Amino acid sequence | MRCVLCIFRRYNLPVFPQWNQLFYSLFHMIIVIRYQESGKFELIIILHNIHYNVSYILF |
Secondary structure | LEEEEEEEEELLLLLLLLHHHHHHHHHHHEEEEEEELLLLEEEEEEHHHLLLLLEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHH |
PiMo | oooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTT |