NONHSAT054471

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT054471

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

564 nt

Genomic location

chr17+:46800530..46802819

Exon number

2

Exons

46800530..46800675,46801690..46802819

Genome context

Sequence
000001 CTCCCGAGCT TTCTCCCCTC TTCCCTGGAG AGCGACTGTT CGGGAGGGTG AGAATGGTAT AAATTTCAAA AACAACGAAA 000080
000081 CCTTCTTTTG CCCCCTCCGC AGCAGTCGCC TCCGGGCTTT ATTGCAAGTT TACGGTTCCA TACAAGTAAA TCCGAAAAAA 000160
000161 AGTGTGTGTG GGGGGGTCCA CACCACTAAT TATTATGGCG AGGAAGATAA AGAAGACATG GACAGAAGGC GGATGGCTCT 000240
000241 GCGGCCTGGC TCCCGCAGAC CGACCGCCTT CTTCTTCCAT TCGAGATGGC TCGTACCGAA CCTCCTTGCC TTCTTCCTGG 000320
000321 GTCTCTCGGG GGCTGGACCA ATACATCTGC CGATGCCCTG GCCGAATGGC AGGCGACATC GGGTCCTGGA CCCCCACACG 000400
000401 CAGCTCAGTA CCCACGAGGC CCCAGGCCGC TGGAAGCCTG TAGCTCCGCG GACGATGAAA GCCTGCCCGC AGGTTCTCCT 000480
000481 GGAGTGGTGA GCCTCTGTCG GAAGGGGGCG CCCACGTCTT TTTAATGGTC CTAACACACC AGTGGAATAA ATCTCTAAGA 000560
000561 TTCC
[back to top]

Predicted Small Protein

Name NONHSAT054471_smProtein_194:442
Length 83
Molecular weight 8882.0143
Aromaticity 0.0731707317073
Instability index 48.1134146341
Isoelectric point 10.1920776367
Runs 9
Runs residual 0.0261456023651
Runs probability 0.0182829888712
Amino acid sequence MARKIKKTWTEGGWLCGLAPADRPPSSSIRDGSYRTSLPSSWVSRGLDQYICRCPGRMAG
DIGSWTPTRSSVPTRPQAAGSL
Secondary structure LLHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLEEEELLLLLLL
LLLLLLLLLLLLLLLHHHLLLL
PRMN -
PiMo -