NONHSAT054540
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054540 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1754 nt |
Genomic location |
chr17-:47535223..47539111 |
Exon number |
3 |
Exons |
47535223..47535500,47535951..47536098,47537784..47539111 |
Genome context |
|
Sequence |
000001 AGTTGCAATG CCCCAGTGAG GCAGTAGACT GACCTCACGT GACTTTTGGG AATGAACACT GAGACCATCA ACCCTATCAA 000080
000081 TGAGGGTTAA AAAAACAACA ACGAAGTACC ACCTGACAAC TTCAAATTAT TTATTGATTC CTGAAAAGGA AAATGAAAGG 000160 000161 AAGCTGGCCA AAGCCACGGA GTGCCAGTTG AATAAGTTAT CAAGAGTCTT CTTGGATTGA CGATGCGGCT CCATTTGCAG 000240 000241 CACTTAGCAT CTTCTGCCTT GGAGGAGAGC TCCTGGTGGG CGCTCAGCCC ACCTGCTTCA ACTGCAAGCT CACTGAAGAC 000320 000321 AGACACCCCA GTTTAGCATG GTGCCCGGCT GGCAGGAGGG CTCTTTTCCT CTTTTGCAGA CTGTTGATGC AGCCTCCTAA 000400 000401 GTACCCTCTC TGCCTCCCAT CTTGGCTCCT CCAGTCCACC CTACAGTCTT CCTAAGACAC TGACTGATCG GATCCTCTGA 000480 000481 CTCTGCTGAA ATGCCTCAGG GACTCTCCAC AGCTACAGCA ATGACTTCCC AAGAGTGCCC TGGGGCACAA CAGTCCCAAG 000560 000561 AGATGCTCCT GAAGAAACAG CTTAGGGCCA AAATAAATGT AGAAAATGCT CTTTACTGAA GCTCCCCAGC TCTTGGAGAT 000640 000641 TCACATGCCC TATGAGCATA ATCAGGGATC TGAGAAGTCC TGCAAGGTTA GCATGCAGCC AGGTTAGCAT ATTTGATACA 000720 000721 GTTTTCCGAA GCTTTTTCCA TCACAGGCAA TCTTTTTGCA AGCAATGTCT ACAAACAGCC CAAGGCATAG TCCCACAGAA 000800 000801 CATACTTTGG GAAGCAGTGA GCTGCATGGT AGAGCCTGAA GTTCAGTCGG GGAGGGGAAG GGCAGCGGTT GTGTGATGAG 000880 000881 TCCCTGCCCA AGGGAACATG GTCTGTGGGA GACTGAGATG GCTCAGGGTG CAAAAGGGAA GGTGCTGGCT GTGTGCAGAC 000960 000961 ATGACAGAGA CTTGTGGGTC AGGAAAGTCC ATCAGCAGCT CTCCTCTCTG CCTTCAGTCT CTTCATCTAG ACACAGATGT 001040 001041 CCTGGGCACG TGTGTGTTTC TAGACCTGGC ACATCCTGAG TGAATCTTGG CCTCTTAATG AACCCAGCAG CCTCCTGCTG 001120 001121 CAGAGTCGCT GAGATGCTGT GCAGTTATGA CATATCCTCC CACCACAAAA GAACATTCCA GCTTGTCCAG GGGATGGTCA 001200 001201 CGGAGGCCAG TGCTCCACCG GATCCCCAGC AGCAGGAGCC TTCTGTGGTA GAAAAAGCAT GGGCATCGGA GGCCGAGTCC 001280 001281 GGGATTCCCA TCCTGATCCA TCACTGACTA GGTGCTGTGG GGCCTTGGAG ACGTGGTTTC AACACATTGG CCAGGCTGGT 001360 001361 CTCGAACTCC TGAAGTCGTG ATTCGCCCGC CTTGGCCTCC CAAAGTGCTG GGTTTATAGG CATGAGCCGC TGCACCCGGC 001440 001441 CCAGGTTGAG GTTTTTGAAG AGCATCACCT TTGCAGGTGA GAAACGCTGC AGGCAGGAAT CCAGCCGTCA TTCTTGACAC 001520 001521 CACCCTTATC TAATCCCCTG CCAACTGCTA GTTCCAGCCA GCATCAGCTC TCTCCTGGAC CACTGCCACT ACCTCCTAAC 001600 001601 AGGATTCCCA CCTCCACCTC CGCTCTCATT ACCCCCGATC TGCAGCCAAC TTGAGATGAT CATATCACCC CCTCCACACC 001680 001681 CAACACAACT CCAAAATGCA AAGAGGCTTC CTCTGTTCTT GGATCAAGGG TTTAAACATG ACCTAGAAGC CCTC |
Predicted Small Protein
Name | NONHSAT054540_smProtein_1097:1306 |
Length | 70 |
Molecular weight | 7546.4709 |
Aromaticity | 0.0434782608696 |
Instability index | 62.2565217391 |
Isoelectric point | 5.34991455078 |
Runs | 11 |
Runs residual | 0.0200889654183 |
Runs probability | 0.0405003934416 |
Amino acid sequence | MNPAASCCRVAEMLCSYDISSHHKRTFQLVQGMVTEASAPPDPQQQEPSVVEKAWASEAE SGIPILIHH |
Secondary structure | LLLHHHHHHHHHHHHHLLLLHHHHHHHHHHHLLEEELLLLLLLLLLLHHHHHHHHHHHHH LLLLEEEEL |
PRMN | - |
PiMo | - |