NONHSAT054635
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054635 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2174 nt |
Genomic location |
chr17+:48436339..48438512 |
Exon number |
1 |
Exons |
48436339..48438512 |
Genome context |
|
Sequence |
000001 TGTGAACCAG AGGTGCTTTC TCCATCTCTC TGGGGCTATC TTGTTCCTCA TCCTGTCCTG TCTCTATGCA TTGGCCTCAG 000080
000081 GCTCTGGCTC CCCATCCATG GCCTCTCAGT GCAACAGACA CTGACCAGAG ACTTTTAGTC CCCAGGTTTC ACATTCTTGG 000160 000161 GACAGCAAAT CTGATTGGCT ATCCCAGTCC ACTGTCTGGC CAGGTGGGCA GGGTCATGTG GCTCTCTGCC CATTTGGCTG 000240 000241 AGGCTAAGGG AGCAGGCTCT GAACAGAGAC ACAGGCTGGG CAAATTTCCT GCAAGGGAGG GCCTAGTATA AGTAACTCCC 000320 000321 CCTGGGAGCT ATGAGGGATG AGCCTCTGGA GGGAAAGTGG CCGGTATGCA GGAGGTGATC AATTGGTAGG TGTTTCCTTC 000400 000401 CCCCACCACG TCCTATCACA AGAAGGTGGT TAAGAGGTGG GGTACCCTAG AGGAGGAGGG GGTGCTGGTG GGGCTGCAGC 000480 000481 AGATCCAGGG CAGGCAAGCT GTGTCCCCCG CACACCTGGA CCTCCCAGTC AAGGGAAGAA TGGCAACAAT GCACAGCAGG 000560 000561 TAGGGACAGG GGCTGCGCCT CAAGGACAAA GTCAGAGGAG GTGCTCTAAG CCAAGGGGAC AAAGCTGGCC ATTGTCTGTG 000640 000641 CATGAAGAGC TGAAGTGCCC GAGTACAGGC TTCTGAGGGC TCTAGGAGCC ACCAATGATG GTCAAGAAAG GGTATGGGAC 000720 000721 ACAAACCAGA CTGTTCCCTT TTCTAAAGTG CCTTGAACCC ACTGCTTTAC TGCATCCTAA AGTTGGGAAT CTAAGGCTTA 000800 000801 CTGCCTTGAT TTTATAAAAC TCAGTTTTAT AGGCACAGAA AGTCCCTTGG ATTAGCCCAA GGTCATTCAG CAAGCTGTGA 000880 000881 CTCAGAAGTA GGGCTGTGAC AGGAACTGGG GTACCCAGAC CCAACTCCTG GGTCTGGCCT CCACGGAGTC TGTTGCAGGG 000960 000961 GGTGTGCTTA CTGCCTGCTC TGCACCCACA GATGATGCCA GCTGGCTGCA CGCAGGGCCA CCCCACAACG AGTACATGGA 001040 001041 GCAGAGTTTC CAGGGCCTGA GTAGCATCCT GAACCTGCCT CAGCCGGAGC TCGCGGAGGA GGCTGCCCAG CGGCACACAC 001120 001121 AGCTCACAGG CCCTGCGCTC GAGGCCTGGA CAGACAGGGA ACTGAGCAGC TTCTGGTCCG TGGCTGGACT GTGTGCCATA 001200 001201 GGCCCCTCTC CCTGCCCCTC CCTGGAGCCC TGCAGACTGA CCAGCTGGAG CTCTCTGTCC CCCGACCCCA AATCAGAGCT 001280 001281 GGGGCCTGTC AAAGCAGACG GGCGACTCAG GTAGCAGGGC CCCAGCCAGT ACCCGTGGAG GACCCGGGAA ATTGCACCTT 001360 001361 ACAGACAGTG GAGGGGTGTC CCCTCCCACA GGCAAGAACC AGAGGCCCAG GCTGCACACC CATTTCAGCC ATCAAGAACC 001440 001441 CACACAGACG GCAGGGAAGG TGGACACAGT ATGAACTACT GCTGATGTCT CTGTTGGGGA TCAGAGGGCT GGCGGGAACG 001520 001521 CGAGAAGGGC ACCAGCAGCA TTCCACACCC AGCTCTTCCT CACCTTCCTG TCTAGTTTGA Atttcttttt tttctttttt 001600 001601 tttttttttt tttAATTTAA AAAGGAAAAT GGGTGGTTGG GAGAGAAACT AGAACAGAAG ATGTGCAATA GGGCTCAGAG 001680 001681 CAGCCCCAGG AAGTGGGCCA TGTCTGTGGG GAGCAGGGGC TTGCTGAGCC CACCTGCTAT TGTTCTGCAC GAGGCTGGGC 001760 001761 CTGCCTCACT CTCCAGGGCC TCATGCCCCA TTCTGGGCCT GTGGTGCTCG TGGCTGAGGC TCCACAGGGC TGCAAGTGCC 001840 001841 CTGCCAGGCT CTAAGGCCCG AAGAACAGGT GATATCGGGG GCGCTGCAGA GCTGGGCTCT AGCAGGACAG TTCTTTTGTA 001920 001921 GCCAGGGGAC CCTAGAAGTG GGGTGGGGCG GCTCCAGGGC TTTCCAGCAT ACCCTGCCCC TGGATGGGAA AGGCAGGGTC 002000 002001 AGGGCCCACT GAGACCCATG CAGAGTTTCC AGGTGTGCAC TGGAAGTGAG GTCACATGAG CAGCGTGGGA AGAAGACTCT 002080 002081 GTCAAGACTC TCAGAAGAAC CTGGAGTAAT TGTGCCTGAA GCTCAGCGTG AAGTCTGAAA TATGCAACAG AAGAAATATA 002160 002161 TCTCTATCTC TCTA |
Predicted Small Protein
Name | NONHSAT054635_smProtein_65:310 |
Length | 82 |
Molecular weight | 8899.1534 |
Aromaticity | 0.0740740740741 |
Instability index | 42.5012345679 |
Isoelectric point | 10.2367553711 |
Runs | 11 |
Runs residual | 0.00637723816532 |
Runs probability | 0.0428208957622 |
Amino acid sequence | MHWPQALAPHPWPLSATDTDQRLLVPRFHILGTANLIGYPSPLSGQVGRVMWLSAHLAEA KGAGSEQRHRLGKFPAREGLV |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLEEELLLEEEEELLLEEELLLLLLLLHHHHHHHHHHHHHH HLLLLHHHHHLLLLLLLLLLL |
PRMN | - |
PiMo | - |