NONHSAT054790

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT054790

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3504 nt

Genomic location

chr17-:53028828..53033879

Exon number

2

Exons

53028828..53029473,53031022..53033879

Genome context

Sequence
000001 ctgggcaacg tggcaaaacc ctgtctctac taaatataca aaaaaattag ccaggcgtgg tggcacatgc ttgtagtccc 000080
000081 cagctactca ggaggctgag gcatgagaat tgcctgagcc tgggaggcag aagttgcagt gagccgagat cacccccact 000160
000161 atactccagc ctaatgacag agtgacactc tgtctcaaaa aattaaatta gccaggcatg gtagcacacc ccaatagtct 000240
000241 cagctactca tgaggctgag tagggaggac tgcttcaacc tgggaagtca aggttgcagt aagccgtgat catgccactt 000320
000321 tattctagtt tgagtgacac agtgagaccc tgtcaagaaa aaataataat aacctgtgtt ctcatggaga gttgtctatt 000400
000401 accagatgaa tgaatctcag gtttttttag gggtaacaAG TCTGGTACCC CAGATGAGAC CCAGGGTTGA GCCCTGACTT 000480
000481 GACCTCCCTT ATAGGCTCCT GGCAGGCAAA GCAGTGGGAT GTGGAAGCAT GCGTGGGCCA ACTCACCTCA GTTGCCAAGA 000560
000561 AGGAGACTAG AGAAGGGCCT TGGGACCCCT GACCTGGTGT CTAGTGTAGT CCACTGACCA GCACCACAAG ACCTCTCTGG 000640
000641 GAGAGTAGAA GCGGCTGCCT AGAGCCCAGA CCTTTTGCTC GGTGCTGCTT TGAAGCAGCA GCTCCATGAA CTACTAAAAG 000720
000721 AGTGGTCTGG GTTTTGATCA TTAGGATTCT GGGTTGTCAG GATTAGGACC TAGGTCAAGG GATCCAGGAT TGTTGAGAAA 000800
000801 AAGAAGTTCC TTCTTTCAGG TCTGGGAGAC TGAGAGACAT CGCCATCGTT TTAACAAGGG GAATCCCCAA CAAAAAGACA 000880
000881 AGGATGCTTG TCTTCAGGCT TTGTTCCCTA CGTGGTATAA CTGTAGGGCT CAATATTCTT ACTTGTCTGT GGCCTGAATG 000960
000961 AATATGAAGT CTGGATTCTT CTACCCTTAG TCTGTGGCAA CCCCTAAAAT ATCAGGCTTT GTTTTGCAGC AGTCACAGAA 001040
001041 GGACTGCTGT TAGTTTGATG AGGAGACCCA AGTTTCAAAG GGGGCAGTTT TGGTGGGATC ATGATCCCTG GAACCAGAAT 001120
001121 GCAGTGATAC AAAGGTTACA TGAACAGTGT GTGTGCTTTC TCTGAGGAAA CACCTCACTC ACTTGATTGA TTTACCTACC 001200
001201 TCCCCACCAC CTGAGCTGGA TCCAGAACTA CTTCATTGTC TCCATGAGAT CTCCTGGGAG GCTGCCCGGA CCGAACATGA 001280
001281 TCCAGGGAAA GGAAATCCCT GTTATCCTCT CAGCTTCCCA GGACCTCTGG ATGGCTTTGC ATGGTGGCCA GCAAAGAGGA 001360
001361 CCAGAAGTAT TCAAGCTGAG TTGTGGGATT TGTGTCATCA TTAATCTCCA GAGTTTGGAA GCCCCTCAGA CTGTGTGCAG 001440
001441 AGACCGTAGA ATGTCGTGAA CTAGGTCTTG GAAGGAGAGC TTGTTAGGGT GCCtcctctg gcaatggaaa ctgcatatcc 001520
001521 acccatgacc aaaaagcaaa tgatatatta ctgtaataca gcctggctcc agtattccct agatcagaag agatggtctg 001600
001601 aatatgggtc acttactgca actctccaat tggacttttt ttgcaagaaa catggtaaat gggaagaaat gccctatatg 001680
001681 caatgtttta tggccctcta tcaaaaccct gccttgcaga tgaaatgcag aatatgtAAA TTGGCCAAAG GGAACTATAT 001760
001761 TGCCAATTCT AGAAGCCTCT GGAGAGGAAG CATCAGTCAT GTGGGGGCCT ATAGGGAAGG GAACAAGTAA GAAGAGTCCC 001840
001841 TTTACTACCC CCTCCAAGAG AAGTGAGGCC CTCTAACTCT ACTCGGGGAC TGGAACCTTG GCCAATACAG GGGCATAGTC 001920
001921 CACCTTCTTG GAAATGGTAC CCTCTGCACC TCCAGGGAAA AGCAAGGGCC CGTTCTGTAT TTGCCAGGCC CTCCAAACTC 002000
002001 TGCAGAGCCA GCTGTGGCTC CTGCTATGGC AATAGCAGGC CCCTGTTGCA CTCTTCTTTG CCAGGGAGCA CCACTCATAG 002080
002081 TGGGAACGCA TATAACCCTG GAGGGTGACT GTTGCCACTC AGAGCATGCC TGTTGGAGAA AGAGGTTTTG CTCGGGTCTA 002160
002161 TGTGTTTTTT AAAACTGTTG ACTTGTATAA CTGGAAATCC CATAGTAAGG GCTTATGGGT GAGCCCACGA GAGTTCGTAA 002240
002241 CTCTCATATG GAGAATATTC TCCACACATA ACCCTACCTG GCCAGGTGTG CAGACCGTAA CAGCAACCCT GCTCACAGCA 002320
002321 GAAGATAAAT CTGCCACCAT GGCCAAAACT AAGGAGGAGG CAGACAATAT GTGTGCTGAT AACCTGGTGA CCTGGCCCGT 002400
002401 TGAGGTGTCA GTCCCAATAG CCAACCCAAA CTGGGACCCC AGTGATAACA AGAATCAAGA GTGGCTTCAT CATTATAGGA 002480
002481 ATATGCTTCT CAGAGGTATG AGGGAAGCAA GCCAGTCCCT GGTCAATTGG GGAAATCTCA GAGAAATAGA ACAAGGCCCT 002560
002561 AATGAAAATC CATCAGCATT CCTAAATTGA TAATAAGAAT GCCTCCAGAA TTACACCCCT TGGGACCCAG ATGACCCAAA 002640
002641 AGCTGAGTAG TACTTTAATC TCACTTCATC TCTCAGCCCC AGATATTCAG AGAAAACTCT AAAAAGTGGC AATAAATCCA 002720
002721 CATACTCCCC CTTTCCAACT GGTAGACATC TCCTTTAAGG TCTATAGTAA AGAGATGTGG CATCTGATGA AAAGGAAGAC 002800
002801 AAGAAGATGC GGCAGCCCTA CAGACTACTT CAGGAAGCCC AGGAAGAAGA TGGCATGGat tagaaaaatt tcaactgtag 002880
002881 gtgcctttgc aaccTATCCT GGGAGACCCT AAAACATATT TAGTTTTAGT GCCTAGAGAT TTTCACTCCT CTAACATCTC 002960
002961 TGGATACAGT GTCCCTGGTC AACATGAAGA AGTTACAGAA GAACGCTTTC TGATCCTGGC CCCTAAAGAA Tttacttgtg 003040
003041 ctaagtaata aaattcctat tgatcaaaac ctgtgtcctt gtggagagtc agatatctgt tactatccag gtgaatgaac 003120
003121 cctgggtttt ttgggtggta acaGGACCTG AGGGGctgca gagcctacct gtgtaaagga gatagctact actcaacccc 003200
003201 agcccatagc tagcacgtaa aaattcaggc ttcgtgttga cagagtatct aaatgatcta gaagtccaga atttttattt 003280
003281 tcaaatatcc gagttttcag ctgttggcaa ctgtggtctt atgatacata ctggtttttg tctaaggttc ctggctcaca 003360
003361 actcccatag cccttgttac agtcttttgt tataatgttg ggtgtgtcag gccttaggag ccagcctctg gaagcagaat 003440
003441 ctctcgacct tctctagtcc tcctttcacc tgccccaagg caccactcta atcgcccacc tttg
[back to top]

Predicted Small Protein

Name NONHSAT054790_smProtein_2774:2911
Length 46
Molecular weight 5412.4428
Aromaticity 0.133333333333
Instability index 52.7755555556
Isoelectric point 11.6542358398
Runs 8
Runs residual 0.0155303030303
Runs probability 0.0443936583643
Amino acid sequence MWHLMKRKTRRCGSPTDYFRKPRKKMAWIRKISTVGAFATYPGRP
Secondary structure LLHHHLLLLLLLLLLLLLLLLHHHHHHHEEEELLLLEEEELLLLL
PRMN -
PiMo -