NONHSAT054871
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054871 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1781 nt |
Genomic location |
chr17+:55064451..55074463 |
Exon number |
5 |
Exons |
55064451..55065211,55065577..55065651,55068460..55068532,55072266..55072996,55074323..55074463 |
Genome context |
|
Sequence |
000001 ttaggcacat tctgggctct ttctgggctt taatttcctc atcagcaagg gacatggctg gactgtgtca ttattcagga 000080
000081 tcttttatat gtaaatttta taactttCAA CCTCTTTGGA AAAGGTATTA GAATAAATTC TGCTCTTGCA GTGTACAGAG 000160 000161 AAGCCAGGAC AATGTGGAAA TTTGATGCAT TTCCAAGAAA ACTGATGTGT GTCCAGACTT TGAGTGTCCT CTGGCTTCTT 000240 000241 CGAGTTAGTG CATAGACTGT CTCTGCATGC TTCTTTCTGC GCTAGTTTAT TACATTTAGT ACATTTGTAT TGTATGAAAA 000320 000321 GCAACAGCCC AGATTATTTG ATCCCCGTGT GTGTTAATCT TTCCTTCCTG CCTCTCCCTT TTTTTTTTTT TGCGGCGGCG 000400 000401 GGGGCGGTTG GCCTTTCTTT GTTTTTGTTT TTTTTTCTAT GTTCCTGTCC CTTATTTTTA AAAATCTCTT TTAGCAACAG 000480 000481 GGATATCATC ACCACGCTGG TATCCTCACA TGTGTGGGTT TTGCTGAGCT AGTAGAAAAT GATCCAAAGA TGATTGGTGA 000560 000561 CCAAATGTCT GATTGCAACA TTTCGTTTTC CTCCGTGGTA CATAGCTCCA GGCTGCCAGT CTCCTATTTG TGGATAATCC 000640 000641 CGTGGGCACT GGGTTCAGTT ATGTGAATGG TAGTGGTGCC TATGCCAAGG ACCTGGCTAT GGTGGCTTCA GACATGATGG 000720 000721 TTCTCCTGAA GACCTTCTTC AGTTGCCACA AAGAATTCCA GACAGTTCCA TTCTACATTT TCTCAGAGTC CTATGGAGGA 000800 000801 AAAATGGCAG CTGGCATTGG TCTAGAGCTT TATAAGGCCA TTCAGCGAGG GACCATCAAG TGCAACTTTG CGGGGGTTGC 000880 000881 CTTGGGTGAT TCCTGGATCT CCCCTGTTGA GAGAAGACAG TAGGTTTGTC TTTGGAAAGA CAGAGGTATG ACATACTTGA 000960 000961 TTTGTACATA TGTGATTTCC TTTAGATTCG GTGCTCTCCT GGGGACCTTA CCTGTACAGC ATGGTAAGTA GATACACATC 001040 001041 TGCACCCTCT GGGCAAACAG CCCAGCAGAT CTCTTCTGGC TGTGACCCCA GGAAAAGAGA TGCTGGATGA GTTTGCCTAT 001120 001121 GTGGTTGACA CTGCTTTTTA GGGACTAGTC ATCCACATAG AGTTGGAGAC CCAAAGCAAG AGCTCGCCTC AGGGACAAAT 001200 001201 TGAAAGAAAA TCAGCACACA TCACTTTTTT CCAGATATAA GAAACACATT TTTCCAATGC cctaaatttt tattacaaaa 001280 001281 attttcaaat atgcagaaat gttgaaagat cacggtgaat acctaCTTAG GTTCAGTTAA CAATTTGCTG TGTTTCATCC 001360 001361 AATAAACATG TGGCTTGTAA CAATACACTT TGATATGTGA GCTCCCGTTC TCCTTCCTTC CCCTCTTTCT CCTACCCCTC 001440 001441 CCTAACTGCA GCAATACCAG ATTGACGTTC CCAAGTAAAG TGGGTCTTTT TGCTCTTGGT TTGCATTCCA GTCTCTTCTC 001520 001521 GAAGACAAAG GTCTGGCAGA GGTGTCTAAG GTTGCAGAGC AAGTACTGAA TGCCGTAAAT AAGGGGCTCT ACAGAGAGGC 001600 001601 CACAGAGCTG TGGGGGAAAG CAGAAATGAT CATTGAACAG AACACAGATG GGGTGAACTT CTATAACATC TTAACTAAAA 001680 001681 GCACTCCCAC GTCTACAATG GAGTCGAGTC TAGAATTCAC ACAGAGCCAC CTAGGTGAGT GAACCTTGAA GTTATTAAAG 001760 001761 TCCCTGCCTC AGCCTCCATG C |
Predicted Small Protein
Name | NONHSAT054871_smProtein_698:922 |
Length | 75 |
Molecular weight | 8272.5997 |
Aromaticity | 0.135135135135 |
Instability index | 57.1352702703 |
Isoelectric point | 8.68450927734 |
Runs | 11 |
Runs residual | 0.00599868160844 |
Runs probability | 0.0309132662074 |
Amino acid sequence | MVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLELYKAIQRGTIKCNFAGV ALGDSWISPVERRQ |
Secondary structure | LLHHHHHHHHHHHHHHHLLLLEEEEEEEELLLLLHHHHHHHHHHHHHHHLLLEEELLLEE ELLLLLLLLLLLLL |
PRMN | - |
PiMo | - |