NONHSAT054871

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT054871

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1781 nt

Genomic location

chr17+:55064451..55074463

Exon number

5

Exons

55064451..55065211,55065577..55065651,55068460..55068532,55072266..55072996,55074323..55074463

Genome context

Sequence
000001 ttaggcacat tctgggctct ttctgggctt taatttcctc atcagcaagg gacatggctg gactgtgtca ttattcagga 000080
000081 tcttttatat gtaaatttta taactttCAA CCTCTTTGGA AAAGGTATTA GAATAAATTC TGCTCTTGCA GTGTACAGAG 000160
000161 AAGCCAGGAC AATGTGGAAA TTTGATGCAT TTCCAAGAAA ACTGATGTGT GTCCAGACTT TGAGTGTCCT CTGGCTTCTT 000240
000241 CGAGTTAGTG CATAGACTGT CTCTGCATGC TTCTTTCTGC GCTAGTTTAT TACATTTAGT ACATTTGTAT TGTATGAAAA 000320
000321 GCAACAGCCC AGATTATTTG ATCCCCGTGT GTGTTAATCT TTCCTTCCTG CCTCTCCCTT TTTTTTTTTT TGCGGCGGCG 000400
000401 GGGGCGGTTG GCCTTTCTTT GTTTTTGTTT TTTTTTCTAT GTTCCTGTCC CTTATTTTTA AAAATCTCTT TTAGCAACAG 000480
000481 GGATATCATC ACCACGCTGG TATCCTCACA TGTGTGGGTT TTGCTGAGCT AGTAGAAAAT GATCCAAAGA TGATTGGTGA 000560
000561 CCAAATGTCT GATTGCAACA TTTCGTTTTC CTCCGTGGTA CATAGCTCCA GGCTGCCAGT CTCCTATTTG TGGATAATCC 000640
000641 CGTGGGCACT GGGTTCAGTT ATGTGAATGG TAGTGGTGCC TATGCCAAGG ACCTGGCTAT GGTGGCTTCA GACATGATGG 000720
000721 TTCTCCTGAA GACCTTCTTC AGTTGCCACA AAGAATTCCA GACAGTTCCA TTCTACATTT TCTCAGAGTC CTATGGAGGA 000800
000801 AAAATGGCAG CTGGCATTGG TCTAGAGCTT TATAAGGCCA TTCAGCGAGG GACCATCAAG TGCAACTTTG CGGGGGTTGC 000880
000881 CTTGGGTGAT TCCTGGATCT CCCCTGTTGA GAGAAGACAG TAGGTTTGTC TTTGGAAAGA CAGAGGTATG ACATACTTGA 000960
000961 TTTGTACATA TGTGATTTCC TTTAGATTCG GTGCTCTCCT GGGGACCTTA CCTGTACAGC ATGGTAAGTA GATACACATC 001040
001041 TGCACCCTCT GGGCAAACAG CCCAGCAGAT CTCTTCTGGC TGTGACCCCA GGAAAAGAGA TGCTGGATGA GTTTGCCTAT 001120
001121 GTGGTTGACA CTGCTTTTTA GGGACTAGTC ATCCACATAG AGTTGGAGAC CCAAAGCAAG AGCTCGCCTC AGGGACAAAT 001200
001201 TGAAAGAAAA TCAGCACACA TCACTTTTTT CCAGATATAA GAAACACATT TTTCCAATGC cctaaatttt tattacaaaa 001280
001281 attttcaaat atgcagaaat gttgaaagat cacggtgaat acctaCTTAG GTTCAGTTAA CAATTTGCTG TGTTTCATCC 001360
001361 AATAAACATG TGGCTTGTAA CAATACACTT TGATATGTGA GCTCCCGTTC TCCTTCCTTC CCCTCTTTCT CCTACCCCTC 001440
001441 CCTAACTGCA GCAATACCAG ATTGACGTTC CCAAGTAAAG TGGGTCTTTT TGCTCTTGGT TTGCATTCCA GTCTCTTCTC 001520
001521 GAAGACAAAG GTCTGGCAGA GGTGTCTAAG GTTGCAGAGC AAGTACTGAA TGCCGTAAAT AAGGGGCTCT ACAGAGAGGC 001600
001601 CACAGAGCTG TGGGGGAAAG CAGAAATGAT CATTGAACAG AACACAGATG GGGTGAACTT CTATAACATC TTAACTAAAA 001680
001681 GCACTCCCAC GTCTACAATG GAGTCGAGTC TAGAATTCAC ACAGAGCCAC CTAGGTGAGT GAACCTTGAA GTTATTAAAG 001760
001761 TCCCTGCCTC AGCCTCCATG C
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Predicted Small Protein

Name NONHSAT054871_smProtein_698:922
Length 75
Molecular weight 8272.5997
Aromaticity 0.135135135135
Instability index 57.1352702703
Isoelectric point 8.68450927734
Runs 11
Runs residual 0.00599868160844
Runs probability 0.0309132662074
Amino acid sequence MVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLELYKAIQRGTIKCNFAGV
ALGDSWISPVERRQ
Secondary structure LLHHHHHHHHHHHHHHHLLLLEEEEEEEELLLLLHHHHHHHHHHHHHHHLLLEEELLLEE
ELLLLLLLLLLLLL
PRMN -
PiMo -