NONHSAT055043

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT055043

Source

NONCODE4.0

Same with

,

Classification

sense

Length

564 nt

Genomic location

chr17+:58024939..58027781

Exon number

2

Exons

58024939..58025241,58027521..58027781

Genome context

Sequence
000001 TACTTGCAGT ACTGCTATGT GCTAAGCTTA ACTGGAAGCC TTGGAATGGG CATAAGTTGT ATGTCCTACA TTTCATCATT 000080
000081 GTCCCGGGCC TGCATTGCAC TGGAAAAAAA AATCGCCACC TGTTCTTACA CCAGTATTTG GTTCAAGACA CCAAATGTCT 000160
000161 TCAGCCCATG GCTGAAGAAC AACAGAAGAG AGTCAGGATA AAAAATACAT ACTGTGGTCG GCAAGGTGAG GGAGATAGGG 000240
000241 ATATCCAGGG GAAGAGGGTG TTGCTGTGGC CCACTCTCTG TCTAATCTCT TTACAGCAAA TTGCACAAGT ATTATCTCAG 000320
000321 TGGATTATCC GGAATAACAT CTGAAAGATG GGTTCATCTA TGTTTGTGTT TGCTCTTTAA ACTATTGTTT CTCCTATCCC 000400
000401 AAGTTCGCTT TGCATCTATC AGTAAATAAA ATTCTTCAGC TGCCTTATTA GGAGTGCTAT GAGGGTAACA CCTGTTCTGC 000480
000481 TTTTCATCTT GTATTTAGTT GACTGTATTA TTTGATTTCG GATTGAATGA ATGTAAATAG AAATTAAATG CAAATTTGAA 000560
000561 TGAA
[back to top]

Predicted Small Protein

Name NONHSAT055043_smProtein_167:343
Length 59
Molecular weight 6809.8598
Aromaticity 0.051724137931
Instability index 59.8568965517
Isoelectric point 9.68890380859
Runs 8
Runs residual 0.0186623721106
Runs probability 0.0305378908321
Amino acid sequence MAEEQQKRVRIKNTYCGRQGEGDRDIQGKRVLLWPTLCLISLQQIAQVLSQWIIRNNI
Secondary structure LLHHHLLEEEEELLLLLLLLLLLLLLLLLEEEEEHHHHHHHHHHHHHHHHHHHHHLLL
PRMN -
PiMo -