NONHSAT055118
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055118 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2743 nt |
Genomic location |
chr17+:59455191..59457933 |
Exon number |
1 |
Exons |
59455191..59457933 |
Genome context |
|
Sequence |
000001 aaggaggaaa cgaaagattt gaAGTGAGAG TATAACTAAA AGATGTGGGA TTAAAATAAG AAATTTGGGA AGAGGTTCCA 000080
000081 GTTATTAAGA TCCTGCCGGT CTCCCATGGT CTGAAGGGTT GGAGTTTTAT CAGTTATTCT CACCTTTTAT TCAGAATAAG 000160 000161 TAGGGATCCA GCAGAGGAAG GGGACTGTCA CTAGCAGGGC CTGCCTTGAC TGCCGTTGCA CTTCCCTGCT CAGAAAGTGT 000240 000241 CCAGGCCTGC ACATTGCACC CAGGCTCCTT GCCATCATGT TTCTGTCTCT TACAGGCCTT CCCCACCTTC CCTTCCAGCC 000320 000321 TGACCTCCCA CCCCTTCTGC AGTAACCTCT GCATATTTCA CCTCCTCCAC CTTCTTGCCA ATATAGGATC CCAGCATCCC 000400 000401 CAGCATGCAC CCTGTTACCT GGCCCTGGTG CATGTTGGTC ACCCCTCAGG ACCGCTGCCC TCCCATCCTG CCCAGTCGTC 000480 000481 GTCTTAGGCC AAGCTCAAAT CTCACCTCCT CTGTGTTGCT TTCCCTGACC ATGAAGCCAA ATGTGTGCAA CTCTCTCTGT 000560 000561 CTCTGAATTT CTGCACCACC GACTTGCTGG ATACTTGGCC CTGGGCAAAG AGTGTATGCT GCCTTTTCCA TTAACTTGCT 000640 000641 CACCAATTCC CTTCGTTTTG CCATTGGAAA AGGGCCGGCC CTGGTGGTCC CTTCAGCCCC TCCCTCACCC ATACTCCCAC 000720 000721 GAGTGTCTTG ACCCACTACT GGTTCTTTGA ACTGAGTCTG AACCATCTTT GTTATCCCCA ACCACCAGCC TTCTCCCTGc 000800 000801 ccagcaacca gcactggaag gagagccagg ctgagcctca gttaatgttt gttgagtgac tggatGGGTT TCTGTGGCCC 000880 000881 CTGAGAGGTA AATGAAAGCC AGTCAAAGCA ATGGGAATAG TTATTGATTA AAAGTCACAC TTGTTAATTT CTGGCCAGGT 000960 000961 CTCAAATCTG ATTCTGGGTA GATCATTTCC CCCACCCCAC CTTCGTCACT AAGGCTACTG GAAGCCCCGC CAGGGGCAGA 001040 001041 GCTGTAATGG GAGTTTGGGC TGAGACTCTC CTCTGCATAT TTCTTAGTTG TCTAAAGTGA CTTTTCAACT CTTTCACCAA 001120 001121 GGCACAGTGA TTCCTATCAA CAAGGAGGAA GTGCCAGTGC GACCTCTGTG ACCCTTCAGA GTCCCCTCTC CAGGTGCTGC 001200 001201 CCCAACATGA AAGCAGGAAT TACTGTGGAT AGGCACAGGC TTGGACTGAG GGGCTGGGGG AGGGCTGTTG GACCCCCAGA 001280 001281 GCCAGGCTCT CCTCTGGAAG CATCAACATA GGTAAATGGT TAACAAAAGG GAGGATTTCT CCCTGTTCCT CCTCCTCTGC 001360 001361 CACAGTATTG ACTGTTAACC ACTGACCTTT CTGTGAGGCG TGAGATTCTG AACAAAGTTG AACGCGGTCA TGGATGGTTA 001440 001441 AATTCCCACC TTTCCCTTCT GCCCTTGCCT CTGCCCCTCT GCCTTCTCGA AACATGGCCC GAGATGTGGA GGCCACCCCC 001520 001521 TGGATGTGGT GGCTGCTGAG AGAGGGAGAC ACACTTGCTC ACAGAAAATG AAAGTTGGCA ATGACCCTCT GACCCTTTAG 001600 001601 GAATCCAGAA TCTTGGCTCC TAGAAGCCAT AGAGCACTGT ACCAAGAAGG CCAAGCCAAG CCCATCCGAT TGAACTTAAC 001680 001681 GGAGAAGTGA AGTTCCCTAG TAGAAGAAGG CATTTTGGAG CCCATCCCGG AAACAGCTTT CCAGCCTTGG CCTTTTACTT 001760 001761 ATTTCTTCCT GCCCACTCCT CCTCCCACGT CACCCCTGCC CCCGGGGACC TGCCGGCCCA CTGCATAAGA CATTTTTTAA 001840 001841 TTTGCTGGCA AAATCCCCCA GCACCAGGCT TCGCAGCCCT CCCCTGTTAC CCACATATGT TTTATGGGGT GTAGCCCGCT 001920 001921 AGCTTGCAGT TCCACCCCTC TGCACCCTTC ATTGAGTTTT GGGAGAAGCG CCATCCAGTC GTGTCATTTG TTCAGGATGA 002000 002001 CTTTTCCATT CCACGCCCGC TGTGTTCGTT TTCCTGGAAT GTTCCCATCA TCTCCCAGCT CCAGTTGGCC AGGGCCAGCG 002080 002081 TGCCATCTCC ATGCTGGTGT GTGTGACTGT TTGGTGCTGA CCCGAGGGGT GGGTTGGTGG AGTACGAGCC TGGGCTGGGG 002160 002161 CCTTATAAGG CCTGGAGTTT CTCGGTTTCA TGCGTTATCC ATCCCCGACC ACTGAGAGCT GAGTAGGATC CTGTGGTTAG 002240 002241 TGCCCTTGAG CTGGTCTTTG TGACCTTTCT CTAAGCAGCC CAACCACACA CTGCCATGCA GCTTTGAACT TCAGACCTGG 002320 002321 TTTCTAAATC CACGGAAGCT GAGAGGAGGA AGAAAATCTG AGGGGTTACC CAGGATGCCG GCTTTCTCTC TACATCATTC 002400 002401 CCTACCCCAG CCCTGTGCAG CAGGCAGGAG TGTAGGAACT CAGGCAGCTG GACTGGGGAG GAGGGAGAGA GGGAAGGATG 002480 002481 ATACCAGTTT AGGCTAGTGA GAAATCTGTA AAACCCTAGA TGTGCTGTGC CTGGGAACAG ACCATGAACA CCCCCGCAAA 002560 002561 GCTCTCAGTG GTCAAACCAG ATTTGGGTAT CGACTCACTT TGATCTCAGC TCTTCCTGCT CTCTTAAAGG TCCAGTTTGT 002640 002641 GATCCGCTTT AAAGGAATAT TTTATTTTCA ATACAGACAC AGCCCTTGAC GTAGCAGTAA AAACCTTCCC CCCTGAGAGA 002720 002721 CACGTGGCAG TGAAGTGTTT TGG |
Predicted Small Protein
Name | NONHSAT055118_smProtein_404:565 |
Length | 54 |
Molecular weight | 5991.1518 |
Aromaticity | 0.0377358490566 |
Instability index | 82.1150943396 |
Isoelectric point | 9.37066650391 |
Runs | 6 |
Runs residual | 0.0470547630005 |
Runs probability | 0.0330183124301 |
Amino acid sequence | MHPVTWPWCMLVTPQDRCPPILPSRRLRPSSNLTSSVLLSLTMKPNVCNSLCL |
Secondary structure | LLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLHHHEEEEEELLLLLLLLLL |
PRMN | - |
PiMo | - |