NONHSAT055163
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055163 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
877 nt |
Genomic location |
chr17+:60662957..60678128 |
Exon number |
4 |
Exons |
60662957..60663587,60673946..60674035,60674581..60674619,60678012..60678128 |
Genome context |
|
Sequence |
000001 GGCAGGGCTG TTTTTTGTTC TTGTTTCTCT TTTTATTTTA ATAAACAATA TGCCAAATTA CAGGGTGGTT TTGTAAACAA 000080
000081 TCATACCAAA GAAGTATATT GTGAGGGGTT ATTTTCTCCA GGAGGCAGGC AGTGTGTGTC CCTGGAATTT CAAAAGTGAC 000160 000161 AGGATGTTTG AAGCTTGTAA AGTCCCAGTG TCAACTGAAG GATAAGAGAC AACCTAAGGC AGACGGGTCC CAGACAGGAA 000240 000241 TAGATGGTGT CCAGAAAGAG AATGGTTGGG AAATGATTCT GAAGGCAGGG GCTATCTTTC TGTTTGTGGT GTTGGCCTGG 000320 000321 TTTTATGTTC TAAATCCCTT GGTGCCAGTG TGTCTGGAGA CTTCTAAATT ATCTAATCAC AAGTTTCAAG AAGGTGCTTG 000400 000401 CAACACTGAT ATAAGTATGT GATGTATTTA ATAATGTATT TTGGACTTTG ATTATGTTAT ATGTTAAATT AAAGCTTCAC 000480 000481 ATCAGTTACC TGTAATTTTT CTTAACATTT ACCCAGTATA TAATTTATTC TCTTTATAGG CATTTGATCT AACAGAGCAA 000560 000561 AGATACGTAG CTGTGAAAAT TCACCAGTTA AATAAAAACT GGAGAGATGA GAAAAAGGAG AATTACCACA AGCATGCATG 000640 000641 TAGGGAATAC CGGATTCATA AAGAGCTGGA TCATCCCAGA ATAGTTAAGC TGTATGATTA CTTTTCACTG GATACTGACT 000720 000721 Catttcctat tctggaccct catatgcatg gaatcatata GTTTTGTACA GTATTAGAAT ACTGTGAGGG AAATGATCTG 000800 000801 GACTTCTACC TGAAACAGCA CAAATTAATG TCGGAGAAAG AGGCCCGGTC CATTATCATG CAGATTGTGA ATGCTTT |
Predicted Small Protein
Name | NONHSAT055163_smProtein_272:421 |
Length | 50 |
Molecular weight | 5473.4953 |
Aromaticity | 0.122448979592 |
Instability index | 40.6512244898 |
Isoelectric point | 6.50714111328 |
Runs | 9 |
Runs residual | 0.0216216216216 |
Runs probability | 0.0415317278063 |
Amino acid sequence | MILKAGAIFLFVVLAWFYVLNPLVPVCLETSKLSNHKFQEGACNTDISM |
Secondary structure | LLHHHLHHHHHHHHHHHHHHLLLLLEEEEELLLLLLHHHLLLLLLLLLL |
PRMN | LLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiTTTTTTTTTTTTTTTTTTTTToooooooooooooooooooooooo |