NONHSAT055163

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT055163

Source

NONCODE4.0

Same with

,

Classification

sense

Length

877 nt

Genomic location

chr17+:60662957..60678128

Exon number

4

Exons

60662957..60663587,60673946..60674035,60674581..60674619,60678012..60678128

Genome context

Sequence
000001 GGCAGGGCTG TTTTTTGTTC TTGTTTCTCT TTTTATTTTA ATAAACAATA TGCCAAATTA CAGGGTGGTT TTGTAAACAA 000080
000081 TCATACCAAA GAAGTATATT GTGAGGGGTT ATTTTCTCCA GGAGGCAGGC AGTGTGTGTC CCTGGAATTT CAAAAGTGAC 000160
000161 AGGATGTTTG AAGCTTGTAA AGTCCCAGTG TCAACTGAAG GATAAGAGAC AACCTAAGGC AGACGGGTCC CAGACAGGAA 000240
000241 TAGATGGTGT CCAGAAAGAG AATGGTTGGG AAATGATTCT GAAGGCAGGG GCTATCTTTC TGTTTGTGGT GTTGGCCTGG 000320
000321 TTTTATGTTC TAAATCCCTT GGTGCCAGTG TGTCTGGAGA CTTCTAAATT ATCTAATCAC AAGTTTCAAG AAGGTGCTTG 000400
000401 CAACACTGAT ATAAGTATGT GATGTATTTA ATAATGTATT TTGGACTTTG ATTATGTTAT ATGTTAAATT AAAGCTTCAC 000480
000481 ATCAGTTACC TGTAATTTTT CTTAACATTT ACCCAGTATA TAATTTATTC TCTTTATAGG CATTTGATCT AACAGAGCAA 000560
000561 AGATACGTAG CTGTGAAAAT TCACCAGTTA AATAAAAACT GGAGAGATGA GAAAAAGGAG AATTACCACA AGCATGCATG 000640
000641 TAGGGAATAC CGGATTCATA AAGAGCTGGA TCATCCCAGA ATAGTTAAGC TGTATGATTA CTTTTCACTG GATACTGACT 000720
000721 Catttcctat tctggaccct catatgcatg gaatcatata GTTTTGTACA GTATTAGAAT ACTGTGAGGG AAATGATCTG 000800
000801 GACTTCTACC TGAAACAGCA CAAATTAATG TCGGAGAAAG AGGCCCGGTC CATTATCATG CAGATTGTGA ATGCTTT
[back to top]

Predicted Small Protein

Name NONHSAT055163_smProtein_272:421
Length 50
Molecular weight 5473.4953
Aromaticity 0.122448979592
Instability index 40.6512244898
Isoelectric point 6.50714111328
Runs 9
Runs residual 0.0216216216216
Runs probability 0.0415317278063
Amino acid sequence MILKAGAIFLFVVLAWFYVLNPLVPVCLETSKLSNHKFQEGACNTDISM
Secondary structure LLHHHLHHHHHHHHHHHHHHLLLLLEEEEELLLLLLHHHLLLLLLLLLL
PRMN LLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL
PiMo iiiiTTTTTTTTTTTTTTTTTTTTToooooooooooooooooooooooo