NONHSAT055178
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055178 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1809 nt |
Genomic location |
chr17+:60885861..60913732 |
Exon number |
2 |
Exons |
60885861..60886312,60912374..60913732 |
Genome context |
|
Sequence |
000001 GTGGGCAGAG AAGAGATGCC CAAGGAGGAG GCGGTTGGCT TTGTCTGGGT GCCCAAGCCC AGACCCAGAT ATCCAGGCCT 000080
000081 CTGCTCCCTT CCCTGAAAGG GTGCTGTGCT TCATAAAAAA TGAGATTAGA AAACGAGAGA GGAAAATATT TTTAATGGAA 000160 000161 TCAGGGAATG TGAAAAGCGG TACATGCGAA GAGGAAAAGA TACTGCAGTC CTGGAGTTCG ACCTCTGCAG AGGACATCTG 000240 000241 GAATGCTCTG GTCCAACACG AAAAAGAAGA AATAAGCGAT GAAGCCAGGC ACCCAGTCAG TGGCAGAACC GACATTAGAG 000320 000321 CCCAGGCCTC TTCGTAATCA GTCGTCTTCA CCCCCTTTCC AAGGAGAGAG GTGCTTAGAG GCCTAGACCA GGCCCTACAG 000400 000401 CTTTGGAGCC AGGGCACCAG AACCGCTACT ACCCTCACCT TCTCTGTGCC AGACTTGGAG TTGAAAAAGG TAGCAACCTG 000480 000481 GAAATGCCAA CAGGAGTAGT CGAAAAAGCC CAACCAAAGC CTGCTGTCTT TAGCCAAAGA ACCATGGAAG AGGCAGCCTA 000560 000561 GCAAGATAGA GAAGTTTTAA ACATCACTAT GGATTGCATT GTGTCTCCCC AAAATTCATG TCGAAGCCTT AACTCCCAGT 000640 000641 GTAATTGTAT TTGGAGATGG GGCCTTTGGG AGATAATTAG GGTTAGATGA AGTAATGAGA ATAAGGCCCT CATGATGGAA 000720 000721 TCAGCAGCTT TATAAGAAGA ATGATGGGGT TGGGTGCAGT GGCTCACATC TGTAATCCCA GCGCTTTGGA AGGCCGAGGT 000800 000801 GGGAAGATCA CTTGAGGTCA GGAGTTCAAG ACCAGCCTGG CCAACATGGT GAGACCCCGT CTCTACCAGA AAATACAAAA 000880 000881 ATTAGCCGGG CATGGTGGTG CACGTCTGTA ATCCCAGCTA CTCGTTGGGA TGAGGTTGAG GCATGAGAAT CGCTTGAACA 000960 000961 CAGGAGGTGA AGGTTACAGT GAGCCAAGAT TGTGGCCTGC TGCACTCCAG CCTGGGAGAC AGAATGAGAC CCTATCAAGA 001040 001041 AAAAAAAAAA AAGAGGAGTG GAGAGAGATC ATTCTCTCTG CCATGTGAAG ACACAGTAAG AAGCTGATCA TCTGCAACCC 001120 001121 AGAAAGAGAG CCCTTGCCAG GAACCAAATT GGTTAGCATC TTGACCTTAG ACTCCCTAAC TTCCAAAACT GAGAAACATA 001200 001201 AATGTCTGTT GTTGAAGCCA CCAGTCTATA TTTTGTTGTA GCAGCCTGAG AAGACTAATA CAGACAATAA CTGCTCTACT 001280 001281 CAGCCAAACA CCACAGCAAA CGCTTTGGCC CCCACCCATG CCAACAAAGG CTGAGTGGGG AGCCTACGAT TCCACCCTTA 001360 001361 TGAGGCTATA ATGCGGCACC TCACCCACCA GGGTTGTGTC AGAGAAGGCC AAGTAGAGAG TCAATAATAA GTCCACTCTC 001440 001441 CACCTGGCCC CCATGGTATC AGTGGAGACC ATGTGGGAAG CCTACACTTG CACCCCCAAA AGGCAGTAAT GAAGTGCTCC 001520 001521 TCTTCATTCC TGCTCAGTGG TATCAGAGTA GGACTAGCGG AGAGTCTAGA CTTTTACCAT CATCCAATGG TAATAAGGCA 001600 001601 ACCCCCATCT CAGTGTCAGT GGAGACCACC TGGGGAGCCA GAATGCCAAC ATCTGCCCAG CCATAATGAG AAGTGTAACT 001680 001681 AAGATGCCAA CAGAGGCTGA GTGAACCTAG TCTTCTACCT GCACCTGTCA GTAATGGGTT GGTGTCTTTC CTCCTCTGCT 001760 001761 GGAGTAATGT CAAAAAAAGC CAGCTAAAAT AAAGAGTTAA CGTAAAATT |
Predicted Small Protein
Name | NONHSAT055178_smProtein_1508:1681 |
Length | 58 |
Molecular weight | 6504.3784 |
Aromaticity | 0.0701754385965 |
Instability index | 65.1264912281 |
Isoelectric point | 6.88018798828 |
Runs | 10 |
Runs residual | 0.0214912280702 |
Runs probability | 0.0360801978449 |
Amino acid sequence | MKCSSSFLLSGIRVGLAESLDFYHHPMVIRQPPSQCQWRPPGEPECQHLPSHNEKCN |
Secondary structure | LLLLHHHHHLLLEEEHHHLLLLLLLLLEEELLLLLLEELLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |