NONHSAT055180

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT055180

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2057 nt

Genomic location

chr17+:60967024..60970110

Exon number

2

Exons

60967024..60967176,60968207..60970110

Genome context

Sequence
000001 TTCCCAATTC CTTAATTTCT CTTAATCTAT TATTAGGCAG TCGAGTTCCA TACATTTATT TCAACCCTTC TTGAACctac 000080
000081 ccatgtggaa ggcagaagcg ctgggacatg accacccaac tcagctctga agcagccctc acacaatgac gggGACTGCA 000160
000161 AAAAGGAAAT TCTTTGATAG AAAACCTGGA CAGAAACATT TTATTTTATT TTTTAACTTC AGGCAGACAA AGGCATGAAA 000240
000241 GAAATGTGCC CTTTTGTTGA CTGATTGACA GCTCCAAACC GAACCAGAAT TTTCAAAAGG TGGACCTGAT CTCGTAACAT 000320
000321 TGTAAATTCA GTATCTATAC GGTTCATGAA AATTGTTTTC CCATTGCTTC TACCTTTATT GTCAAGCTGT CAAAATAGCA 000400
000401 ACTTCCTACT TAAGTTATAT TTATGCAAGC ATATAAAGTG CTTTTTATTA AATTTACTTT TGGTTGAATT AGATGGACTA 000480
000481 TTTTAGAGGA AATAAATCAT TTGTATAATG GTGAAGAAAT TGACCTTATG GGCACCTTCC TAAGAATGAT GTTTCATTAG 000560
000561 TGCTGGATCA GCTTTTGGTA TCTGCAAGAC AATCTGAGAT CTGGAGACCA AGGGCAGTAT ATTTCATTTA CATACTCCAT 000640
000641 CAGGCTCTCT GCCTGGGTCC TAACTCACCT CACCAATGGG CTTACTTTTG TCTTCATTCT TTGTTCCTGA TATATATATA 000720
000721 GGCCAGTGCA TTTGAGACAA AACCAATAAG AAGGCAGGAG CCAGGAGCTG TTTCTAATCC AAGCATCTCA CATAGGTCAA 000800
000801 ACCTTTAAAG ATGGGAATGA AAATGAAGCT GTCCACTCTG GTCCATTGTC AAAGAGGTCA TTTGGCACTC ATCTCACAAA 000880
000881 TGGGGTAGCA TAAAAGATGG GAGGAATGGA GTGCGATGGG GGCAGGGGGA GGCGATATGC AGAAATGACC AGGCAGAAGG 000960
000961 TTAGGCCCTT GGTTTCTCAG TCTACAAATC CTGGCTGTGA TTAGATTTGG TACCGCACAC TTTTCAGAGA TTGCTGGGGG 001040
001041 AGAAATCACC TGCCACCTGC ATTCTGCTGG TTGGATTTGC TACTGATGGA GAAGGTATAG GCTTTACCCA GGACCGCATT 001120
001121 TTTTTTTTTT AACTGCCTTA CTCACATGTA CCAATGCCAC AGGAAATTGA TGGTAACCAA TTGTCTATGT GCTTTTGTTA 001200
001201 GCACCTCTTT TCTGCTGTGC TGGGCTACAC AATTACCACA GCCCTTGAGA ATGCTTATTG TCAATAGGAG TAATTTCACA 001280
001281 TCCCATCCAT TTAGTGAAAA GATGTGAAAA TTGATCCAGC TTCTGCGATA AGACTGGAAC CAGGGTGCAG GCTACAAATG 001360
001361 CCTTGGAAAT AAATATATGT CCATCATTGT TTTCATTAGG TATTGCTGTA GCCCAGCCTC CAGGGAAATG AACTCAAGTC 001440
001441 CAGCTGTCTT GCCGTAGAAG TTCAGATGTA CTCCCAATCT GGTGAAGTGG GCTGTCAGTT TCATTTATTG TTAACTTTTT 001520
001521 GTAGTGGTTG TCAAGTAAGG GGTTGGCAGT CTGAAGAGCA CAATTCTGTT TTATCCACAG ACAGGGGACA GTGTAATTCG 001600
001601 ACACTGGCTG CCAAGGAGGA ACTTGTCCTT CCTATCCAGC TTATTGTCTG GACTCTTTTT TTATGATTTC AAAAGTCTCT 001680
001681 TCAAAAGGGC AACAAAATTA GCCTTAAATA GTATTTCTTG GATTGCCTTT AACAATGGCG ATAAGGCCAA AGCTTCTAGT 001760
001761 CTTGACAGAA GTGGTTTCAT GACAACTTGT TTTTATCTTG CCAGAATAAG CAAGGAACTT AAAAATGTGT TTTCATTATG 001840
001841 GCTAAAGACT GTGTTTCAGC TGATGTCTCT TGCAAGGAAA GAACAATCTG CAAACTCCAT TATTATGTCT CTCATTCACT 001920
001921 TTCTGCTCCT AAGGCAAAAA GATTTTTGTG TTGTTTTCTT TTTTGTTGTT GTTGTTTTAA AGAGGCCCTC TATTTCAATT 002000
002001 AGCACAATTA ACATATCAAG AATTTGTGTT TCCATAAATT CTACATTTCA CTTCCAG
[back to top]

Predicted Small Protein

Name NONHSAT055180_smProtein_1145:1306
Length 54
Molecular weight 6224.3962
Aromaticity 0.11320754717
Instability index 47.5320754717
Isoelectric point 9.24615478516
Runs 7
Runs residual 0.0281868384722
Runs probability 0.0459535165418
Amino acid sequence MYQCHRKLMVTNCLCAFVSTSFLLCWATQLPQPLRMLIVNRSNFTSHPFSEKM
Secondary structure LLLHHHHHHHHLHHHHHHHHHHHHHHHHHLLLLLEEEEEELLLLLLLLLLLLL
PRMN -
PiMo -