NONHSAT055180
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055180 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2057 nt |
Genomic location |
chr17+:60967024..60970110 |
Exon number |
2 |
Exons |
60967024..60967176,60968207..60970110 |
Genome context |
|
Sequence |
000001 TTCCCAATTC CTTAATTTCT CTTAATCTAT TATTAGGCAG TCGAGTTCCA TACATTTATT TCAACCCTTC TTGAACctac 000080
000081 ccatgtggaa ggcagaagcg ctgggacatg accacccaac tcagctctga agcagccctc acacaatgac gggGACTGCA 000160 000161 AAAAGGAAAT TCTTTGATAG AAAACCTGGA CAGAAACATT TTATTTTATT TTTTAACTTC AGGCAGACAA AGGCATGAAA 000240 000241 GAAATGTGCC CTTTTGTTGA CTGATTGACA GCTCCAAACC GAACCAGAAT TTTCAAAAGG TGGACCTGAT CTCGTAACAT 000320 000321 TGTAAATTCA GTATCTATAC GGTTCATGAA AATTGTTTTC CCATTGCTTC TACCTTTATT GTCAAGCTGT CAAAATAGCA 000400 000401 ACTTCCTACT TAAGTTATAT TTATGCAAGC ATATAAAGTG CTTTTTATTA AATTTACTTT TGGTTGAATT AGATGGACTA 000480 000481 TTTTAGAGGA AATAAATCAT TTGTATAATG GTGAAGAAAT TGACCTTATG GGCACCTTCC TAAGAATGAT GTTTCATTAG 000560 000561 TGCTGGATCA GCTTTTGGTA TCTGCAAGAC AATCTGAGAT CTGGAGACCA AGGGCAGTAT ATTTCATTTA CATACTCCAT 000640 000641 CAGGCTCTCT GCCTGGGTCC TAACTCACCT CACCAATGGG CTTACTTTTG TCTTCATTCT TTGTTCCTGA TATATATATA 000720 000721 GGCCAGTGCA TTTGAGACAA AACCAATAAG AAGGCAGGAG CCAGGAGCTG TTTCTAATCC AAGCATCTCA CATAGGTCAA 000800 000801 ACCTTTAAAG ATGGGAATGA AAATGAAGCT GTCCACTCTG GTCCATTGTC AAAGAGGTCA TTTGGCACTC ATCTCACAAA 000880 000881 TGGGGTAGCA TAAAAGATGG GAGGAATGGA GTGCGATGGG GGCAGGGGGA GGCGATATGC AGAAATGACC AGGCAGAAGG 000960 000961 TTAGGCCCTT GGTTTCTCAG TCTACAAATC CTGGCTGTGA TTAGATTTGG TACCGCACAC TTTTCAGAGA TTGCTGGGGG 001040 001041 AGAAATCACC TGCCACCTGC ATTCTGCTGG TTGGATTTGC TACTGATGGA GAAGGTATAG GCTTTACCCA GGACCGCATT 001120 001121 TTTTTTTTTT AACTGCCTTA CTCACATGTA CCAATGCCAC AGGAAATTGA TGGTAACCAA TTGTCTATGT GCTTTTGTTA 001200 001201 GCACCTCTTT TCTGCTGTGC TGGGCTACAC AATTACCACA GCCCTTGAGA ATGCTTATTG TCAATAGGAG TAATTTCACA 001280 001281 TCCCATCCAT TTAGTGAAAA GATGTGAAAA TTGATCCAGC TTCTGCGATA AGACTGGAAC CAGGGTGCAG GCTACAAATG 001360 001361 CCTTGGAAAT AAATATATGT CCATCATTGT TTTCATTAGG TATTGCTGTA GCCCAGCCTC CAGGGAAATG AACTCAAGTC 001440 001441 CAGCTGTCTT GCCGTAGAAG TTCAGATGTA CTCCCAATCT GGTGAAGTGG GCTGTCAGTT TCATTTATTG TTAACTTTTT 001520 001521 GTAGTGGTTG TCAAGTAAGG GGTTGGCAGT CTGAAGAGCA CAATTCTGTT TTATCCACAG ACAGGGGACA GTGTAATTCG 001600 001601 ACACTGGCTG CCAAGGAGGA ACTTGTCCTT CCTATCCAGC TTATTGTCTG GACTCTTTTT TTATGATTTC AAAAGTCTCT 001680 001681 TCAAAAGGGC AACAAAATTA GCCTTAAATA GTATTTCTTG GATTGCCTTT AACAATGGCG ATAAGGCCAA AGCTTCTAGT 001760 001761 CTTGACAGAA GTGGTTTCAT GACAACTTGT TTTTATCTTG CCAGAATAAG CAAGGAACTT AAAAATGTGT TTTCATTATG 001840 001841 GCTAAAGACT GTGTTTCAGC TGATGTCTCT TGCAAGGAAA GAACAATCTG CAAACTCCAT TATTATGTCT CTCATTCACT 001920 001921 TTCTGCTCCT AAGGCAAAAA GATTTTTGTG TTGTTTTCTT TTTTGTTGTT GTTGTTTTAA AGAGGCCCTC TATTTCAATT 002000 002001 AGCACAATTA ACATATCAAG AATTTGTGTT TCCATAAATT CTACATTTCA CTTCCAG |
Predicted Small Protein
Name | NONHSAT055180_smProtein_1145:1306 |
Length | 54 |
Molecular weight | 6224.3962 |
Aromaticity | 0.11320754717 |
Instability index | 47.5320754717 |
Isoelectric point | 9.24615478516 |
Runs | 7 |
Runs residual | 0.0281868384722 |
Runs probability | 0.0459535165418 |
Amino acid sequence | MYQCHRKLMVTNCLCAFVSTSFLLCWATQLPQPLRMLIVNRSNFTSHPFSEKM |
Secondary structure | LLLHHHHHHHHLHHHHHHHHHHHHHHHHHLLLLLEEEEEELLLLLLLLLLLLL |
PRMN | - |
PiMo | - |