NONHSAT055219
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055219 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1824 nt |
Genomic location |
chr17+:61778207..61780030 |
Exon number |
1 |
Exons |
61778207..61780030 |
Genome context |
|
Sequence |
000001 TGCAACCCTG CGACGGGCTG GGGAGGCCGG TATGCGTGGT TCCCGGAGCA CCCGTCCCCC GAGGCTCCAC GTACTCAAGC 000080
000081 GTTTCTGGGG CGGAATTCTG TGGGCAGCAA CGGGGGCCCC CTCTCCAACA AGCGCACCTC ATTTCTCACG TGGGAGCCGC 000160 000161 GGCCCAGAGA GCTGAGGTGA CAGAGCTTGG GCCGCAGAGC TGCTCCCTCC CTGCAGCCGC ACAGCAGGCC GGAGGCACAG 000240 000241 CCGGCGAGAG ACGGCCACTC GCTTTGGAGC GGCGGCGAGG CCGGCGCCTT CCCGGGCACC AGGGACTGCG TGGCTTGGCC 000320 000321 GGAAATCAGG CTAGAAGCAG CTCCGGGAAG CACAGCCCTT AGCCCAGCGC CTTCCCACAC TGTGGCAGGA ATAGCACTGG 000400 000401 CGGCCCACGC GCTTGTCAGG GAACAGAACA GCTCTCGCCC GACGCCTGGC AGGGGAGCAG GGAGGCTGCA GCTTCCCCAG 000480 000481 CGACCAGCTG TTTCCCAGGC TGGCGGACTC CACGGACCGG CTCCGCGTCT CCTCTCCAGC CTTCTGTTCT CTCTAGAGGA 000560 000561 AGATCTGCGT TTTGTCTGCA CTGTGGGCCG ACTCTCTAGT GGGGAGCGTC AGACCCTCTA AAGTGGCTGC CTCTCGGGAA 000640 000641 AGCTTCCACA CCTGTCATCA GATTCTCCAA AGGGGCTGTT TGATGCAAGA AACGGGAAGC CCCGGGGGTA CTAGGAGCAG 000720 000721 GGCTTGCTGC CATTGGGCAT GGTGAGGCCC CGGCACCCTG CCCAGGACGG GCCTGTGGGC TGAGCTGCAG ATGGGCATTG 000800 000801 AGGATGCCCC AACAGCAAGG TGCAGAAGGC ATCCAGAAGC AAAGGAAACT GATGACCAGC GTCAAAAACA AACAAAAAAA 000880 000881 GGGAACTTGG CTCGGCGGTG GCTCACGCCT GTAGTCCCAG CACTTTGGGA GGCAGAGACA GGTGGATCAC GAGGTCAGAA 000960 000961 GTCCAAGACC AGCCTGGCCA ACATGGTGAA ATCCCGTCTC TACTAAAAAT ACAAAAATTA TCCAGGCGTG GTGGTGTGTG 001040 001041 CCTGTAATCC TAGCTACTCG GGAGGCTGAG GCAGAAGAAT CGCTTGAACC CGGGAGGTGG AGCCTACAGT GAGTCAACAT 001120 001121 GAAGCCAGTG CACGCCAGCC TGGGCGACAG ACTCTGTGTT TGTGTGTGTG TGGGGGGGGG AGGGCGGGGC GAGGCGAAGG 001200 001201 GAACTTGAGG TTTAAAGCAG GGGGAGGAGG GCCGGAAATG CTCCCCGCCG CCCCCGACAC TCACTCGCCC CAGGCCCCAT 001280 001281 CCTAGCCCAG GGTCAGTGTC ATTCCCTTCA CCTTAGCCTC TCACTGCCCA AAGAGGCTTA CTTTTCTTCT TTAAACTGCT 001360 001361 GTTAAAATTT GGGAGGAAAC GGAAAGCAAG GGCACCTGAT GGTTCAGTGC AGCTTCAGGT TAGAGGGGCA TTTGAGGTGC 001440 001441 CTGAGCTGGG GGAGGGCCTT CCCCCTGAGG GACTGGGAGA AGGGTAAGCC ATGTGCCCTG GAAGCACTGC AGGGAGCCTC 001520 001521 AGATTTGCAC CCCCTGGCTC ACACTCGCTG GCGCCAGCCA GCATGGCAGG GATGGGCGGG GCTGGTTCTT AGGTTTCCTG 001600 001601 CTCTTTGGGT GCTAGCACCC AGGGTAAGGA GACACCCATG TCCGGTTGCA AGACAAACCC TTCTACCTCC TTTCCTGCCA 001680 001681 AAGGCCACCA GCATCCTCTG CCTCAATCTC AATCTTTGGA ACTTTTTAGC TCCAAAGTGG TTTGATGACC ACAGGCTAAA 001760 001761 ATTCATAGTC TTAAAATTTT AGATAGTTAA GAGACAGATC TGTTACAGGT TTTCAAATAA ACTG |
Predicted Small Protein
Name | NONHSAT055219_smProtein_803:913 |
Length | 37 |
Molecular weight | 3998.6389 |
Aromaticity | 0.0277777777778 |
Instability index | 55.7555555556 |
Isoelectric point | 11.2636108398 |
Runs | 5 |
Runs residual | 0.0415695415695 |
Runs probability | 0.0278042748631 |
Amino acid sequence | MPQQQGAEGIQKQRKLMTSVKNKQKKGTWLGGGSRL |
Secondary structure | LLLLLLHHHHHHHHHHHHHHHHHLLLLEEELLLLLL |
PRMN | - |
PiMo | - |