NONHSAT055342
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055342 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3425 nt |
Genomic location |
chr17-:62962668..62971703 |
Exon number |
5 |
Exons |
62962668..62964499,62968652..62968780,62968872..62969045,62969360..62969635,62970673..62971703 |
Genome context |
|
Sequence |
000001 ATGTCGCGGG TGAGTGGTGT CGAGGCCTGT TGGGTCAGGG CGGTTCGCAG GTGCTGTCAG AGCTGGGCGG GGCAGCCGGG 000080
000081 TCGTAGAGGC GGGCGCCAGT CGCGGTCGGT GGAGAGGGAT GAGGATGTAG GAGGGACGGA CGTGGCGGAA GCCGCGGGGA 000160 000161 CTGCGGGGGC GGAGTGCCTC TGGGGAGCCA GGGAGGCCTT TCCAGAGGCT CCTGGGGGAA GAAGAGGCGA AGCGAGAGTC 000240 000241 CCCGGGGAAG CCCTACTCCA CCCCCAGCCG GAGCCTGGGT TGTGCCTGCA CGGACCAGAG CCCACAGTGC GAGTTGCTGT 000320 000321 AGGCAACCAG CTAGGGTGGC CAACTTCTCC CGGTTGGCCC GAGATGTTCT GGTTTTGGGA CCACAGCGTC CCAGGCCTCC 000400 000401 AGCCCACCAC AGTGACCATA TTGTGCGCCC CCTGCCCATC TTCTCCCGCA GCTTCCCTAG ATTAGGCTTG GGAGGCAAGG 000480 000481 GGAGGCCTCC TGACTTTTCT CACTGCCTTC GTTAATATAA AGATGAAGGC ACACTCCACA ACTTCCTTCT GGCCAGGCCC 000560 000561 AGACATGTCT GTCCTTGTGA GATAAAAGCT TCCATGGGAG CCTTCCTTCC TAATCAAGGT AGGTAGACCA CTGGAAGGTA 000640 000641 CATCTGGTTT TATATTTTGT CCTGTAGAAG TCAGATTTCA GCCCAGTTGT GTAGGAGTGA GGATGAGCTT ATGCTCTTAT 000720 000721 CAGAGCTTTG AGTACAGAGA CATTTGATCT GGAATTTCAG CCAGCCTCTT CAACCCCAGA ATTCAGAGGT TCAATCAGAA 000800 000801 CAGACATTAG CTTAAGTTTT CCCATCAGTT GTCTATCATT AAACTGGCAA AATCTAGATA ATTAGAAAAT ATGACAGAGA 000880 000881 TGATCCAGAC AGAGATGTTC AGGTTTTTCC TTGTGTAATT CAAAAAGTCT CGTGGTGGAA CATCTGACCC TTTTCAAGAG 000960 000961 GAAGGATGAA AACTCTACAT AGGAACACGA TGTGAATGGA AGAAACCTGT CATTATGCAA ATAGTACGGT ATTCCGAACA 001040 001041 GACACTAAAA ATAGCTGTCA TCTCAAAGAA TCCAGTGCTT GTGTCACAGT ATGAGAAAGT AGATGCTGGG GAACAGCGTT 001120 001121 TAATGAATGA AGCATTCCAG CCAGCCAGTG ATCTCTTTGG ACCTTGCATT CTCCATCAGA TTGGATCACC TCCCACCCTG 001200 001201 AGGCCCCCCA AGACTTTGAA CAGTTCTTCA GTCATCCTTA CAGAAAGATA CCCTCTCCAG ACAAACGCAG TATTTATATA 001280 001281 CGGTCCATTG GATCTCTATG AAGCACCAGA ATTATCAGTG AAGAATATAT TAAATGGCTC ACGGGCTACT GTAAAGCATA 001360 001361 TTTCTATCGC TTGAGAGTAA AACTGCTAGA ACCAGTTCCT GTTTCTACAA CAAGGTGTTC CTTTAGAGTC AATGAGAACA 001440 001441 CACAAAACCT ACAAATTCAT GCAGGGGACA TCCTGAAGTT CTTGAAAAAG AAGAAACCTG AAGATGCCTT CTGTGTTGTG 001520 001521 GGAATAACAA TGATTGATCT TTACCCAAGA GACTTGTGGA ATTTTGTCTT TGGACAGGCC TCTTTGACAG ATGGCACTGG 001600 001601 TGAGGTGGAT TGATGATGAA TCTTCTGGCA CACCTGGAGC AACTCCAGAA CACAGTCGTG AGGATAATGG GAATTTACTG 001680 001681 AAACCCGTGG AAGGAAGCCT TTAAGGAATG GAAAGAGTGG ATAATAAAAT GCCTGACTGT TCTCCAAAAA TAAGGACCTT 001760 001761 CAAATAGGAG TGATTGAAAT AAATGACTAC TTGCATGTTA TGCTTTCATT TGGGTGGAAT ACTTCATCAG AATAAACTAT 001840 001841 TGATCTTGTG CTGTGTCAAA GTAACAGACT AGAACCTTCT TTCAAGTACC TGAATTGAAA TGAAACTCAT TTTGAATAAT 001920 001921 AAAAACTCTA GAAACTCTTT ATCTTCTCAT CTTACTGGCC TGGTCTGTGG CAGCAAGCAC ATTATTTCCA TTCCCCAAAT 002000 002001 ATGTTTAGGT CTCCCAAGAA AGCTGGGACT GGCGGTAATG AGCAAGTAAA TAACTTGAAA AAGAACTGTA GATGCCCCAA 002080 002081 GGAACCAACC AACATAATTT CCAGGGGGTG ATTTTGTTTT TAGAAGAGCT GCTCCCCTCT GTTAGGGCCA GCCAAGTCAC 002160 002161 ATTTTTGGAC GTCCGTGGAC TCTGATCACC ACAGCCCTCC TCTTCCGTGA GCCTTCCTTA CTCTCTCGAG TGCATTAGCT 002240 002241 CATTTTTTTT CTTTTGCTGG TTGTCACCTT ATTCCTGTTT TAGTTTTTAG CAGCTTAAAA TACGACCTCT CAGGAATATT 002320 002321 TGCAAGTGAA AATAACAATG GTCCTTACAC TACCACAACA TTTGGTGGTG GGAGTTCCGT TGCAGGTCTC AGCTATAACA 002400 002401 TAGTCATTTA TGAGGGATCT TACAAATAGT GTGTAATGGT ATTTATATTT GTGAGTGTTA CACTTTCTCT ATAGACTTAG 002480 002481 AGCAGCTTTC AGGTTTATTT CAGTAATAAT GTCTTTCTCA CCTTCTCACA TTGTGAAGTG TTTACCTGAG TCAGGGAGAG 002560 002561 AGTTTAATGG GGTTATCTGT CGGGGTGCCA TGAATGCTGA TGATGGTCTG CAGGTTGTGA ACATCAGCCC CATTGCTACA 002640 002641 GGGGTGGACA GGTGGAAAAG CTCAGACTTG ACAAACCACC TCTGCTAGAT AGATGTGTCT TGGAAATCCA GAAATTACAG 002720 002721 TGAATATTTT ATGGAATGCC AGTGAGCAGA CAGCATTTCC CACTTTCCTA TCTTACCTTG AGGGTAAGAC TTAAAGGTAT 002800 002801 TTTTTTTTCT TGTAATTTGA AGCCTAAATT CTTTGATTGT TTGATGTATG CAATATGATG TAAGGCACAT TTTATACCCC 002880 002881 TAGTCAGTGG TTTCCCTTGG ATTCATTCTC CTACTTGATT GAACCCATTT AAGTCATTTT AGGAAATGGT GGTTTGCTAT 002960 002961 TAAAATTAAT TGGAGAGAAT ACTTGGTCAT TCTGTTAGCA AAAAGAGACT GATGGAGCAT GGTGTTTTAT GGATTCTGTT 003040 003041 ACAGGGCTTA TTCCTCCTTG AATAATGTGC TTTAAAAATT ATTGTCCATT CGATTACATT TTCTTTTATT TTCCTACAAT 003120 003121 GTAAGCACGG TTTTAGTCCT GTAGGTCAGC CTTTCTCACA AACTCTTTTG AACTAAGATT TGCCTAGGTG AATAAATTGG 003200 003201 GGATGACGGT TGTCTGGAGA AGATATAAGG TCCATTTGTG AATACTCTGC ACTATGAGAC CAGGAGAAAA ATCATCTAAG 003280 003281 AAATCGTTCA CTCTTGCTAA AAACTGAACT AAATTTTATA TGATGCATTT ATTCAGCAAT CATAAGTGCT GTGCATAACT 003360 003361 ATTGTACATA TTTTTGGACA ATTTCTTAGG GTTCAGCTTA AAAATATAAT TTGCCTACTG CAACT |
Predicted Small Protein
Name | NONHSAT055342_smProtein_2735:2857 |
Length | 41 |
Molecular weight | 4781.7744 |
Aromaticity | 0.175 |
Instability index | 59.7325 |
Isoelectric point | 9.89642333984 |
Runs | 9 |
Runs residual | 0.0469758064516 |
Runs probability | 0.0306286678836 |
Amino acid sequence | MPVSRQHFPLSYLTLRVRLKGIFFSCNLKPKFFDCLMYAI |
Secondary structure | LLLLLLLLLLHHHLLEELLLLEEEEELLLLHHHHHHHHLL |
PRMN | - |
PiMo | - |