NONHSAT055408

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT055408

Source

NONCODE4.0

Same with

,

Classification

sense

Length

6956 nt

Genomic location

chr17-:65066554..65073490

Exon number

1

Exons

65066554..65073490

Genome context

Sequence
000001 TAAATGTTTG TAACCTGGCT TCCCTCTTCT CCAGTGGTAT AAAGAATTGT GCCGCTTTAA GGTTTGGGTT TTTTTCTCTC 000080
000081 CAGTAAAAAT TTTGGTACCT TATTTGATGT TTACATTAAA ATGTGACATT ATACGTGGCA ATTCAAATAT TTTGCTAGCT 000160
000161 GTCTTGTTTG AGGAACACCA TTAAAGAAGA AATATAATGT TTGTCAAAAA TGTATCAAAA TTCATCAGAA TCTGGGGCAG 000240
000241 AAAACTACCC TTGTTTTTCA TGTCTTTCAA TTCTTCTAAA ATACCCCTTA TTGAACTTGT ACACAATATA AAATTTAAAT 000320
000321 AGCCATCTTA AATATTCTAC CATCTAAAAA TTGCTTTGAA TGAATTTTGG TAAAATCCAA AGGAAGATGT TTACCCTCTT 000400
000401 GAAACTTATG GTCTTGTCAC ACATTTAAAG CAATATATGT CCTTATTTTC CTGACCTTGT AATACTACTT TTATATTTCA 000480
000481 GAGGTATCTC GAAACTACAA TATAAACTTT TAAAAAAAAA TAAGATGAGG CTGGGGAACC TTTCGAATGA ACCCAATCTT 000560
000561 CCTGATGATC CATTCAAAAA CAGGTTTTTG GAAGACCACT TTCGATAGGC AATCCTATAA TCAAAGTACA TTTTTAAAAT 000640
000641 CAGGTTGTAA AATGGCAAAG GTAAAGAAAA ATTACTGACA TTTCTTCTAT GATTGGAGTT TAGTTTATGT TGGCCAGCTA 000720
000721 CAACCCCTTT TAATCCTCAG ACAGTTTGGG ATAAAAGAGT GCCTTTGGTT AATGGTTAGC AAGCTCCAGG ATAAGCGCTG 000800
000801 CGTGCCTCTT GTATTCAGCT CTACCTTTCT GCTAAGAGTG CGGTTCATTT GTGTGTGGCT TTGCGTTCCA GGCTGTGGGT 000880
000881 CTCTGTGTAA GGTGGCAGAC ATAGACTTGT AAACTGCAGA CGTGTTAATG GTTAGCATAA ATCACAGCTG GAAAACTGAG 000960
000961 CCGGCAAGTT ACAGCACCAC TCTTTCTCTG TATGATGTCA GATCACCACA TTTAGCAATG TCAAATTTTA CTCAACATTC 001040
001041 TTTAGTAGGA AGAAAAGAAG AAAAAGTTTT GCCACGTAGC TATGTGCTTT TAAGTCTGTG ACAAAACTCA AGACATATCC 001120
001121 GAATGAAAAT TAGATCTCTC TGATGTGAGG ATGTTATGGA AAATAATTTT CCCATCAGTG ATTATCCACC CCCCAGCCCC 001200
001201 CATATACAGG ACTACAACGC AAGCTAGATA AATGTTCAAA AGCAATCTGA TAATATGAAG ACAGAATTGT CAAGTCAGGG 001280
001281 CTTTCAGTTG ACCCCTTGTC ATGAGGTTAT TGCCTAATTT TCTGTTTTCT ATACTTGAAT CTTTAAAAAA TATCAGTTTT 001360
001361 TAAATTATTT ATATTTATAT TTAGTTAAGG GTCATGGGGT CGTGTATGCA CCCCATCACC TTATATAAAT ATGTTGATGA 001440
001441 TGGAAGCTTT GGATAAGGAA GCTATTAAGT TGTCATGACA TCCTTGTTCT AAGCAGTTAT TTCTAAAAAC TAAAAATAAT 001520
001521 AGCTACTTAT TGGCCCACCG CTCTGCTGTG AGTATATGAG TACTTCTCAT TCCTTATTTC CATAGCCAGT CAAGGATTCT 001600
001601 AACGCTGCTT CCATCTGATA CTCTTCTTAG ATTCTGCATC AAATGCTTAT TTTGACTTAC AACAAGCTTA CTCTTCCTCA 001680
001681 GCATTACATA ATGCCATCTT TCCAACCATG CTTTAAAGAA CCTGCTCTTT ACGCATAGTA TCTTATAACA TTTTGAACAC 001760
001761 GTCTTGTGTA AGAATCATTG CAAGTTTCCA TCAAAATGAG GCGTGTCTTC TGAGTACAGC TGATGTTCTT TGGGTATTAC 001840
001841 TTGAGTAGTA GTAGCAAGTA CCCATAAATC AGATTTATGA AACATAACTT ATATGCTAGG TTCAACCCTT ATATATGCAT 001920
001921 ATATATGTAT AGTATATGTA TATAAAATTT TTTTCCAGAA AACTTGATGA TAGCTCTCAG ATAATACCAA GTATTACCAG 002000
002001 CTTCCATTTC TTCAGAGCAG ATTTTTTTCT AAGTGAGGTT AATTGTTCAC ATAATGTCTT TTTACATCTT TGTCCTTTGT 002080
002081 ATCACTCTGA AGTTTTCTTT TTCTTGCCAG AATATTTGTT TCACTTTTTA ATTTCAGTGC TACTTGAGAT TTTCTTTTTT 002160
002161 TTTAACCTGA AAGACGATAT TTTGGATGAT AGAGTTTGTA AAGTGAGCCT TCATGCTGAA AAAATTCTTT TCATGATCTA 002240
002241 AAAATGGTCT TTTGTTACGA TTTGAAGAAC CTCATTCCGT GTAACATGGA TATTTTCTTG TGTGTCTTTA AAGGGGGTTT 002320
002321 TGGTTGTCAT TTGGGCATAT GCTTTGCCAA ATTGTTATAG CAGAACTTTG TTTTTGATTA ATCAGTAGTT AATTATTGAC 002400
002401 CATTTAAACT AACATGACCT TAATTTTCCT TTCCTCACAC AGATGTGCTT TCTATCCAGG TCATTTTTTA CACGTGAAAT 002480
002481 AACAAACTGC TTTGTGTAGA TTTTTTTTTT TTTTAAATCA TCAGATTTTA GAATAAGTTT AGGTTTAATG TAAACATCAA 002560
002561 CTGGTCTTTT CAGTTCAGAG AACTGCAGAA TAAGTAAAAT AAGCAGAATT CCCACTGAAT AAGCATTACC TAATTAAACA 002640
002641 TAGCAACATC TAAGACCAAT TTATGAAAAT ACTCTCCTTT TTTATGGAGG CATTGGAGCT GCTGAGAAAG CTAATGAATT 002720
002721 TCCCAACTTT GGGATAATTA ATATATAGTA TTGTGTTGCT CTAGTGTAGT TGATTTTATG TGTTTAATAT TTTTCATGTC 002800
002801 AAGAGCAAAG CTGCAGACGT AAAAGATGTT TCTCTAGCCC CCTTAGCTAG AGCGAGCCAC CTTTGTTAAG AGTCAGGGTG 002880
002881 TGAAGAACAA TTTCAAGATA AATTTTAGTA TTTCAACCAT TGTTATTAAG AAAATTAGAC TTACTGAAAT ACTCATTTAA 002960
002961 AAACAGACAC CTTCTATAGC ATTGTTTTAT AGTGGAGTTA TTTTTAAAAA GGGAATCCCA GAAAGAATCT ATAAAAATAC 003040
003041 AAGGTTAAAA CTCTAAATGT ATTGAAAGAT ACAAATTGGT GCTTTCAAAT GTCATGTAAG CTAGCCATTG TGTTTTTTTT 003120
003121 TTTTCCCTCC AGCTCCTCAA TGGTAGTAAT TTGTCTTTTA TGATTTACCG TACATTATTT CTTGCTCGCC ATCCCCTTAA 003200
003201 CATATGAAAA TCCTTAATTT CTACTGCCGC GCTATATGTC TTCCTGAATC TCAAGGTATA AATGTCTTAA TGGATCTGAT 003280
003281 TTGTCTCCAC TCTTTGCCAT CTGATCCACA TTCAAACCGC CTAGAAATTA GAAAGAATAG GTAATGTTCT ATCTACGATT 003360
003361 TCTTGTTCAA AATATCACGT AGTGGTGCCA ATCACTTACA AAGACACCAT CTCCATCTTG AAAGAGTAAC TGGCATGTTA 003440
003441 GTCTTGAAAA TGCTCATTAT GATATGCTCC TCACATTTCC CATCTGCTTG AGGATGGACA TTTATTAGCT GAGACTTTAA 003520
003521 AGCTGCTAAA TTCACACTTT CTACTTTCAT ACCTTTTTAA TCAGTAATGT CAAGACCATT GTTGCAAGGA GTGAATCTTA 003600
003601 CTAAACACAT CCTGTTATTA CTTTAAACTA GAATATGAGA TTCAAGAGAT TTAAAAACAA TTTTAATGTA ACGTTTAAAA 003680
003681 TTTTTGAACC AATTGAGAAT GTCTACTTTG GAGTGAAGTT TAAGGAAACA GTCACCAGAG TTTCTAAAAA TTTTTTGGAG 003760
003761 GGAGGTACCT AATAGAAGAA TCTAGACTTA GAAATGTGAA CTGTGGTTAA ATACCAAACC CAGTTCCGCA GTGGTCGTCT 003840
003841 AAAGCGTCTA AAACTGGAGT GTTAAGAAAA CCCAGAGACA TTCATATAGT TTCAGTTATC AGAGTATTAG ACCAGACTTT 003920
003921 ATTTGCAATT TGTTCAACAG AGAGATTTTA TTTTGATACA GATATTAAGC ATAAAGCATA GTAAGTTTTA TATAATTCTA 004000
004001 TGAGTTCATT AAACAATATT ATGAAATTTT CATTATGTTC GTGGGGAGTC TTTTTAACTG TTTCTACCTC ATATACGAGG 004080
004081 TCTCTTCTGT ATTTTACTTT GCATACTAGC ATGTGATTGC CTGCCTTAGA ACTATGTAGA GGAGGGGAAA TCGATATTAC 004160
004161 CTTTTAAGAA ATTGTTGATT TTGTGAAGTG TTTTCATTAA TACTTTTTTA ATGTTTGAGA AGTAAAGGGG AAAGGGTGGC 004240
004241 AAATTACATA GGTTGCAACA CAGAGTAGAA GTCACATAGT ACTATTTACA GATCTGTCCT GTTTTAAGAT TTGAGAATTG 004320
004321 TGAACAGGAT GGAGCAATGG TTCTCAAACT TCAGCCAGTA TCAGAATTGC CTCGAGGTCT TGTTAAAATT CAGATAGCTG 004400
004401 GACCCACCCC CAGCATTTCT GATTTTGGTC TGGAGCCTGA TGATTTGCAT TTCCAACAAG TTTCCAGGCG ATGCTGATGC 004480
004481 TGCCAGTCCA GGAACCACAC TTTGAAAATC ACTGGGTCTG ATTCTCGCAG TTTGAAAGTC TCAGAGACCT TCAGAGTCTG 004560
004561 AACGTCTTTT CAACCATGTA TTTATTTACT CAGTGTAAAA AACTGATCTC TGGAGACATT TTTATAAATC TGGTGCCATG 004640
004641 ACTGGAACAT TTGTGGAGAA AGGTCTCCAT GGAGCGACAG GCCCTTTGGA TTGGCCACCA CCCCTCCTCA CTCTCACCCC 004720
004721 TGCTGGGGTC TGCACTGCTC TTCCGCAGTA GGGTGAAGGA GCTCTTTGGT TTTAGGGTGA GTTTGCTTTT GTGTACGCTG 004800
004801 CTGCCTGGAC ATCAGTCTGG AAGCTGTGCA TTTGTTTGGT GTGCTTAGGG TCAATCTTGA TCCACATGCA TGGAAGTGAG 004880
004881 AATCCTGGAA AGAAGCCATC AGAATGCCAT GAGAGTGCAC CTAGCATGTA TCGAGGCACT AAGTGCAGGA GTCCCTGTCC 004960
004961 TAAGATGGCA GTGACATGGA GCATCGAAAA CCACAGATAA TCCTTAAATA ATAAAATAAT AGTTTTGTTT TTTTTTCTTC 005040
005041 GGGGCAGAGT CTCGCTCTGT TGCCCTGGCT GGAGTACAGT GGCATGATCT CGGCTCACTG CAACCTCCGC CTCCCGGCTT 005120
005121 CAAGTGATTC TCCTGCCTCA GCCTCCCAAG TAGTTGGGAC TACAGGCATG CGCCACCACG CCCAGCTAAT TTTTGTATTT 005200
005201 TTTAGTAGAG ACGGGGTTTC ACCGTGTTGG CCAGGATGGT CTCCATCTCT TGACCTCATG ATCTGCCCGC CTCGGGCTCC 005280
005281 CAAAGTGTTG GGATTACCGG CATGAGCCAC TGCGCCTGGC AAATGTTTTA GTTTTTATGG TTATTATTAT TTTTTTTTTG 005360
005361 GTGGGGGGAG GGTGGTGAGG GCAAAGGATT TGTTTTTCAA ATTATGTGTT TCTCAGGTTA ACAAAGTTAT TTTAGATTCT 005440
005441 CTGCCATGCC AGCAGGTGTT AGAGAGAGCC TGAAGTGTTA CATATGGCAG AAAATAAATG TCTCTGATTA CTTTGCTACC 005520
005521 TTTAAAAAAA TCTATATGTG TTTGCAAAAC AGCCTAGGGG GATCTACCAC CTACACAGCA TGAATTATTC ATAAGTCATA 005600
005601 GGTGCACATG TATGAGCAAG TTATTTTTGA GAAAGAAACT GCCTATAATA TAATAAACCT GTCAGGTCTT TGGGTATTGT 005680
005681 TTAATTTGTG TGTTGTTGCT GTTTTATCTG GACTGCATCT TGGGGGGTAC TGGGCTCTGC TTCTGGTTTT TAGTTTGCCT 005760
005761 TTGAATTTAC TGAGCTACTA GAAAGACAAA AAAAAGCTAT TTTTATGGTA ATAGAATACA GAATGACTTA GGTGTAAAAG 005840
005841 TACACGTGAA GACCATCGTA GAATATACAG CTTTGGAGTT TTCTTAAGAC ACAGTCCTTC CTACTGAAAA GGCTTGCTCA 005920
005921 CCTTTGGAGA GGATTGTTTA TATTTTCAGC CTGGGTTCCT TTATGCAGTC CCAACTTAGA GGGGAGCTTC GGTTTATTTA 006000
006001 CACTTTGCTT TGCACGATAA CTTGTATGCG AAGACCTCTT TATATCTTTC AGTAGGTCAG AGGGCTCTTT GTCCTGGTTG 006080
006081 AAGTCCCAAA GTGTCAGTGC AGCTGAGAAT GTTTCTCAGC CTCCCCCTTT ACAGAGGAAG GGTCCTGGAT TTTCATAAAT 006160
006161 CCAGACCATG CCTGCTTCCT ATAAATCCAT GTATATGACA TTGTACTGTA TCTGATTTCT GTGCCAGTCA TCTGACCTGA 006240
006241 TTCTTTAAAC CCCATAAAGG TACTGGCTAT ATGTAGTAGT AGTATCCTAG GTAAATATGG TGATTAAAAT ACTTCTCTTC 006320
006321 TAAATTATAA AGATAATGAG TTTTGCATTT TATTAAAGGG TCCTGTTGTT AGTGACACAG GATTTTTTTT TTAATGCTTC 006400
006401 ATACATATAG TTCTTATCTA AACTTGTTCA GCTAACTTCA TAGATCAGTT ACTTAGCAAA TTCATACTGA GTCTTATTTT 006480
006481 GGGAAGTCTT CCTGAGGGAA GCTGTACAAA ACTGAGGTGG TCAGGTTCAT CTCTTCAAAG TACCAGTTAT ACAGCCATCT 006560
006561 AAATAGGCAT AACTTATGGC AAAATTATAA CAATTTTTTT TCTTTGCAGT AAACGATACC TCATCTAAGA GGCTCTAATA 006640
006641 CCTAAAGAGT TTATCCTTAA AAGTAAAAGT GACTTTGTAC CATAAAATAA CCCCAAAGCC ACTCTCTAGG GTTTTTATTT 006720
006721 TCTTCTTTCT TTGTCTTTAT CTTTTCTAAC TTAGTTTTGG AATTACGTTA GCTACTTTGG TTCCATAGAA CAAGTTTTCA 006800
006801 ACTTGGGGTC TACAGTTCCT ACAGTGTGCT CATTGTCTCA GTGAAGTTCT TTTGTTTTCA AAGATTCATG GTAACAAAAT 006880
006881 GTATTTTACT GCTACAACTA AAATGTATTT ATAATAAAAT GCCTTTTTAA TAATTTGGAA AAAAAAAAAA AAAAAA
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Predicted Small Protein

Name NONHSAT055408_smProtein_3203:3343
Length 47
Molecular weight 5353.2976
Aromaticity 0.0434782608696
Instability index 51.3719565217
Isoelectric point 8.63336181641
Runs 8
Runs residual 0.0125517598344
Runs probability 0.0312665606783
Amino acid sequence MKILNFYCRAICLPESQGINVLMDLICLHSLPSDPHSNRLEIRKNR
Secondary structure LLHHHHHHHHLLLLLLLLHHHHHHHHHHLLLLLLLLLLHHHEEELL
PRMN -
PiMo -