NONHSAT055581
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055581 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1075 nt |
Genomic location |
chr17-:67472750..67481521 |
Exon number |
2 |
Exons |
67472750..67473691,67481389..67481521 |
Genome context |
|
Sequence |
000001 ATGATCTAAA ACTTCCTTCT TTCTTCTAAA GGCCTCCTCC GTTCCAAAGT TGCTCATCCT AAAACCTGAA AAAAAAAATG 000080
000081 ACTCAGAAGT GGTTCCCATC TCAAGAACTA CCCACGAGTC TCAGTGGACA CATtccccga tgcagccttc caatccagca 000160 000161 gaggttccaa ccaacttcca aacaggtgca acttgatggc acctcatttt tggctgtacc agatgccttc tatctctgga 000240 000241 ctcctgccct cagacttctc cgacacctga agaaagcttc tgggacagct gacatgcaca acctgggagc taaaacatgt 000320 000321 gggaccagct gtgaccaatg aacaatgatg gacaggagac gataacccca ttagttcctt acagtgctga gataaatttc 000400 000401 atgagtctcc tagaagatct gatgggattg aacatcagtt gtacctagca tggccgctgt actggctttc cttccttccc 000480 000481 tatttcatcc cccctcgtcc ctcctactcc ttgggatcac attgacaaat aagtctcttg catgcaattc tttatttcaa 000560 000561 gctctgtatt cagTTAGCAG ACAGCAGAAA TGTGGTCCAA AGCAGGAGAG GACTCAGCAG CAGCAGGCTC TGGTACAATC 000640 000641 TGCCCTGTCA CTCAAGCCAT GTGAATGAGA AGATCCAGTG GTGGCTGGTT GAATGCatga ctcccctgtg gatgtcagcc 000720 000721 agagtcttct tctcagacaa ccagtgctag cacaatgggc ccatggatga gatggctcag gtggcaggat aaaggctgta 000800 000801 tgtgggctcg gtattgtggg ctttctctta gcaatgacct agctattacc actgctgaat ggtccagcca accaatggca 000880 000881 gagggagatg ccaatctcta tagcaccttc acagatatca gccaggccct tggggaaagg ctgatcataa cagaccactt 000960 000961 ccaccccaaa aaggagaggg gagatagaaa ttcatgctta cataaattga catgtactcc aggtttgggt ttgctttctc 001040 001041 tgcctttagg gtctctgcaa gtgccactat ttgag |
Predicted Small Protein
Name | NONHSAT055581_smProtein_77:340 |
Length | 88 |
Molecular weight | 9686.0369 |
Aromaticity | 0.0804597701149 |
Instability index | 56.4564367816 |
Isoelectric point | 9.30059814453 |
Runs | 13 |
Runs residual | 0.0111658456486 |
Runs probability | 0.0371842430667 |
Amino acid sequence | MTQKWFPSQELPTSLSGHIPRCSLPIQQRFQPTSKQVQLDGTSFLAVPDAFYLWTPALRL LRHLKKASGTADMHNLGAKTCGTSCDQ |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLEEEELLLEEEELLLLLEELLHHHHH HHHHHHHLLLHHHHHLLLLLLLLLLLL |
PRMN | - |
PiMo | - |