NONHSAT055612
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055612 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1698 nt |
Genomic location |
chr17+:68071387..68098351 |
Exon number |
2 |
Exons |
68071387..68071531,68096799..68098351 |
Genome context |
|
Sequence |
000001 AGGAACAAAC CGGTGTCAAT GGTTAACCCA GGTTCTTGGT GTCTGGAGCT TTTCTTTCCT TTATTATTAA CTAAAGAGCA 000080
000081 TTCTCTACCA TTGCCCAGCT GAAAGCACCT AGCTCATAGA TTCTCTGTGG GGAGAGTGAA TAAAGaatgg gggattgagg 000160 000161 cacagagtgt taaaatagtg agacacagga ttctaactgg cagactggca ctttatctca attcttAACT GCTGTGTTGC 000240 000241 CTCTCACTTT AAAGATAAGA AATTAAACCA ATTTTAACAT GATTCTCCGA AAAACCAATA CTTGCACTCC TTCCTCCATG 000320 000321 AAAATGTGCT TTATCCCTAC GCATTTTTCC AGAAGTCCAG CTTTCTACTT ATACGTTTAT ATTTTCATAA ACTTTGCTAC 000400 000401 AGAGCAAATT CGGTGTTACA AACATTGCTT CCTTTTGTTC ACATTTTACA CGTTTACTGC CTCCTTAAAT CATTCACCTT 000480 000481 CACTGTATTT TAGGAAAGAA ATGCTATTTA TATATTTTGT GAATCCACAG TCTATTATAC ATTCTGCTAA CTAAGAATAA 000560 000561 AACTTGTCTA CTTGGTTATT TGAGTCTAGA Gaatgatttt caacctggag tgactttgct caccaaggga catctggcaa 000640 000641 tgtctggtca catttttgga tgtctctact ggggtttggg gtcatactgg catctagtgg gaagagttta gggatgctgt 000720 000721 taaactaaat gccataacca caggtcatct tcccacaaca aagaattttc tggccctaaa tattgaggtt gagaaacccA 000800 000801 GATCTAGGAT ATTCTGTGCA TTTAAAATGA TTCCGTTCAG AACAATTTAG GTACTTTCTC AATAGTACTG CAAAAGCTAT 000880 000881 ATGAAAACTA TATGTATATA AAAATTATAT CTATCTGTCT CTAGCTACAT TAACATATCA ATCTGCTAGG TTAAGTAGAC 000960 000961 TCAATTTAAC CATCTGGTGT TTCATGTTTG CTTTTGATTT GTAAAAGACT CAGACCTATA ACATAGCCTT AATGCTAATA 001040 001041 TCATTCTTGA GATAAACGAT TATAATTGCA GAtttctttt tttttgagaa agagtctcgc tctgtcaccc aggctggagt 001120 001121 gcagtggcac catctcagct cactgcaaac tccacctccc aggttcaaac aattctcctg cctcagcttc ccgagtagct 001200 001201 gggattacag gtgcccgcta ccaATACTTG CAGATTTCTT TAGTGTTATG TTATTTAGCC ACTCATCCAT TTTTTTAAAG 001280 001281 ATTTAAGTAT TAAGCATTCA CTGTACACCA AGCAATGTTC TTAGTGAACA AGTAATTTAG AATTAGATTA CAATTAAATT 001360 001361 GTGGATTTTA GGACATTTTA GTTAACGTTT ACTGAAAAGT ATTATCACAG AATTTATATT TTCTATAGTT TATGTTGTTT 001440 001441 TATATGATTA TAAAAGCAAT GATTTAAGAA TTAAGTGAAG TATTTTACAT GATGTGGAAA AAATGAGAGA AAAAGATGGA 001520 001521 AAAGAGTTGA TTGAATTATT CATTTTCACC TGATTAGTTG AAGCCAGTGG TTAGTAACAT CACATGCACA AAGGACCCAG 001600 001601 TGGCTGATTC AAAATAGTAT TCCATTCTCT CCCCATGATT TTACAATGAA ACTACGAGAC CAATCAGGAC ACCTTCTTCT 001680 001681 TTCTTCTTGT TCACCAAA |
Predicted Small Protein
Name | NONHSAT055612_smProtein_278:553 |
Length | 92 |
Molecular weight | 10892.698 |
Aromaticity | 0.208791208791 |
Instability index | 60.9969230769 |
Isoelectric point | 9.38763427734 |
Runs | 14 |
Runs residual | 0.0203754578755 |
Runs probability | 0.089661089661 |
Amino acid sequence | MILRKTNTCTPSSMKMCFIPTHFSRSPAFYLYVYIFINFATEQIRCYKHCFLLFTFYTFT ASLNHSPSLYFRKEMLFIYFVNPQSIIHSAN |
Secondary structure | LEEEELLLLLLLLLEEEEELLLLLLLLLEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE ELLLLLLLHHHHHHHEEEEEELLLEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHH HHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTT TTTTooooooooooooooooooooooooooo |