NONHSAT055624
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055624 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1587 nt |
Genomic location |
chr17+:68877214..68879710 |
Exon number |
3 |
Exons |
68877214..68877284,68878039..68878126,68878283..68879710 |
Genome context |
|
Sequence |
000001 TGGTAGTAGA TTTGCAAGGT TTTGAAATAA GAGAAGAGAG GGAGGAAGGA AGTAATTTAA GGACATGATT TCATTTTTAT 000080
000081 TTTTTTTGTC AGTTTGGCCC ACAGTTTAAC CTCTTTAAAG CCCACTTTGT TCATCTAGAT TAATGAAATA CCATAGCACT 000160 000161 CTTTCTTTTA TCCccacttc aagggtgata tgtagagtag tagtggccgc agtgcttgag aacatcttag aaatgcagaa 000240 000241 actcggccac acctcagacc aagcaaatca ggatctgctt tccagcaaaa tctccaacta aatcaaaagc actttgaaat 000320 000321 ttaaaaagca ctgGTTTATA GAACTGGATA AATAATGATT AGGATAAAGA AGCACAGGAA TCCCGTGACA GTTGTAGGTT 000400 000401 TTTTAGCTCA ATCAGGGACT GAAAGTGTAA AGAGGTAGGG GGAAAGAGTT TGGTTTCATT TTTTATTTTT TTGGTGTTTT 000480 000481 GTTTTTGTTT TTAAGCTAAA AGAGGCCAAA AGGCTAAGGA AGAAGAGAAA GCATGCAGGA ATGAGACACT TTACTAAAGA 000560 000561 AACCCAGTTC CTGAGTTTTT TTCCGATTCA GAAAGGAATG GGATGGAAAG CAAAGGTGGA TGTATCATCA ATCTAATTTT 000640 000641 GCGGAAAGGA ACTGACTTCT TCCAAGAGGG AGGAGGAGGG GCACAGAGCA ATGCATTCTG GTGAGTAGTC GGGCAGGAAG 000720 000721 CTGAAGAGGT GAGTGAGCAA ACGGCAAGAT ACCTGGTGAG AGAAAGGGGA GGAGTTTTCT CAGAGAAGGT GATGGAAGTT 000800 000801 TGGAGGAGTT GGTGTGGAGG ACGGGAGGGA AATGCAATTG CAGAAATACA GATGGGCCAA AGAAGGTAGT GAGGGCTAGG 000880 000881 ACATTTGCCA CAGTGCTTCT CAGTCCCGTG GCATGTGAGG CCTGAAAGAA TGAGTAGCCT TCACATAAAA GGACAATAAA 000960 000961 AGAGAAGTGA TGTTGCTACT ATTATGTAAG TTAAGGAATG GAAActgtgc atggtggctc gtgcctgtaa tcccagcact 001040 001041 tggggaggcc aaagcaagag gatcacttgg ggctaggagt acaagacgag cctggtcaac aaagtgagat cttttctcta 001120 001121 tggaaaTAAA TAAATAAATG GGAAATGTAA AAAGTAGGGC ACTCTTTCTC TAGAATTTTG AAGATGCAGG GCAATTGTAG 001200 001201 ATGATGGAAT GAGGTTTCCA AGGGTGCAGT GTAATGGTTA GAAGGTGCGG CAGCCAGGGT GAGTGGGGTA GAGATGGAGC 001280 001281 CTGCTGAAAG GGATTATGCA CATGAGAAAA AGTAAACAAC TAAAGGAGAG CAGAAATAAT CAAAAGCAGA GTGTGTCAGG 001360 001361 CTTATGACTC AAAGCAGTAG CCATGAAAGT TGTTCGGCTG AATCCCCAGA TGCTGCGGAG ATTCTAATTG TTATCTGCAT 001440 001441 TTGGTATAAA CTAATTTTGA GACTAGGAAT TGGAGCAGAA TTCTGAAAAG AGAGGGAAAA GGTTTGCTTT CTGCAATGAT 001520 001521 ACTTTTAAGT CTAAGGTCAG GAAAGTGCGT CCTAACATGT TACACGAAGT ttttttttgt ttttttg |
Predicted Small Protein
Name | NONHSAT055624_smProtein_602:703 |
Length | 34 |
Molecular weight | 3532.9562 |
Aromaticity | 0.121212121212 |
Instability index | 48.7393939394 |
Isoelectric point | 5.93511962891 |
Runs | 5 |
Runs residual | 0.0326086956522 |
Runs probability | 0.0387740681858 |
Amino acid sequence | MESKGGCIINLILRKGTDFFQEGGGGAQSNAFW |
Secondary structure | LLLLLLEEEEEEEELLLHHHLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |