NONHSAT055781
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055781 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
5657 nt |
Genomic location |
chr17-:72296761..72305929 |
Exon number |
4 |
Exons |
72296761..72298009,72298210..72298376,72299778..72303477,72305408..72305929 |
Genome context |
|
Sequence |
000001 GGTGGTTCCC CAATGCCCCC ACCCTTCCGT GGCCCCAGCC AGTGGGGCTC AGCTCTGGCC ACCCTGACAT GAAGGGGAAG 000080
000081 GTCCAGCAGC CAAACCCCAG GGGCTCTGAA GGAATCGGCC TGTGGGTAGG AGATGCCGGG TACCTGCTTT TGTTTCTTTT 000160 000161 TAAATTTCCC CCAGGTGATT CTGTTGTGCT ACCAGGATGC CAAATCCCCC AGGCCCCTTA ACCTTTGTAG GAGCACACGC 000240 000241 TCGAAAGCAA TCGCTGCAGT CAGCCTGCAC ACGGCTCCCC CACAGAGGCC CAAACACACC TGGCCACACA CTGCACACGT 000320 000321 GCTCACAGCA CCCCACACTC ACACCCACGC CGGGACCTGG CTCCCTGAGG ACCTGGATGC ACAAGGAGGG ACATGCACGT 000400 000401 GACCTTCAAG CTGAGGGTGG GATCGCACTG CTCGAACATG AAGTCCCAGA TATCCAGGGT TCCGTCCATC CTGGTGGTAA 000480 000481 AGAAAACGGT CGGCCTCACG GGGCTCCAGG CAGCATCAGT GAGGAGGAGG ACAAGGGAGA CCCAGGTTCT ATGACACAGG 000560 000561 TCCACCAAGT CCCTCTAGGA ACCAGCCCTG CGAAAGGCCT ATGGGTGCTG TGCTCGACAC CCTGCTCCTT TCACACAGCC 000640 000641 CTGGCAGCCT GCAGGACCTG AAGACATTGG GAAGGCTCCT AAAGCCTGTA AAGGGCTTCA CATCTACTGG GAACCCCCTA 000720 000721 CTTGCTATGA GGCCTGGAAC AATGCACTGC CCTTGTCAGC CAGCGTTCCC ACCCCTGTAG AATGAGGACA TCGAACCAGG 000800 000801 TTTCTGCTCC CAAAGCAAGG ACTGGCTGAG TCACAAGCCT GGGGTTGCTC CTTAGCAAAC CCATTCCTGG GCTAAGCCCA 000880 000881 AGATTCTATG TTAGTACCCC CAGGGTTGGG GCTGAGAATC TGGATTTTAA AAAAATCACT CCTCCACCAG GCACGGTGGC 000960 000961 TCATGCCTGT AATCCCAGCC CTTCGGGAGG CTGAGGCAGG CGAATCACCT GAGGTCAGGA GTTTGAGACC AGCCTGGCCA 001040 001041 ACATGGGGAA ACTCTGTCTG TACTAAAAAT ACAAAAATTA GCTGGGTGTG CTGGCGTGCG CCTGTAATCC CAGCTACTCA 001120 001121 GGAGGATAAG GCAGGAGAAT CGCATGAACT CGGGAGGCGG AGGTTGCAGT GAGCCGAGAT CGCGCCATTG CACTTCAGCC 001200 001201 TGGGTGACAG AGTAAGACTC CATCTCAAAA GCATTTTAAC AAACAAACAA AAACTCCTCC CAAGATATTC TGATGCAACC 001280 001281 AGATTTGGGA AGCACTGGAA CCAAAGATGC TCATTAGGGT TGCTGGTGGC TTTGACGTTG CAGGAGTCTG TGGTTCTGTG 001360 001361 GGCAGGAAAG GAACCCCAGG ATGTTTTTTT TAGCAAGAGA AAAAAGTAAT TATTTATACA TGCAATGCAC AATACACATG 001440 001441 GCAGTGCTCG GTGGTGAATG ACTCAAGGGG GTGGTTAGAA TTCGGGCTTA TTACCTAATT TAGGAGATGA AGGGGAGGAG 001520 001521 GAGAAAGGGC ACTTTTAGAC AAGGTAAATG GGCCCTAAGA AGAATGGAGG GGGATGTGAT AGTCCAAGCT TCTCTGGTCT 001600 001601 AACCATTGTG CTCATAGCTC TGTCTCAAGC TCCCTGTCTG TTGCTCTCCT CAGAGGAGTG GCACTGAGCA AGACAGGCTA 001680 001681 TGCCTCACTG CTGAATCGTG CCAAGGCACC CGCATTTCCC AGCCAAGCTT CCTGGGTTCA CACCCAATCT CGGCTCCTCA 001760 001761 CTAGCTGGGA GAGCAGGAGC AAGTGGCTTG GCCTTTCTGT AGCCCAGTTC CCTAACATGA AAAATGAGAT GAAGAGAAGA 001840 001841 GCAATGCTGC CTCCTCCTGG GGATAGTTTG AGGATTATGA AAATTAAGCC AGCCAGACGC GGTGGCTCAC ACCTGTAATC 001920 001921 CCAACGCTTT GGGAGGCCGA GGTGGGCGGA TCACCTGAGG TCAGGAGTTC AAGACCAGCC TGGCCAACGT GGCAAAATCC 002000 002001 CATCTCTACT AAAAATACAA AAATTAGTTG GGCATGGTGG CAGGTGCTTG TAGTCCCAGC TACTCAGGAG GCTGAGGCAG 002080 002081 GAGAGTCTCT TGAACCTGGG AGGTGGAGGC TGCAGTGAGC CGAGATCACG CCACTGCACT CAGTCTGGGG AACTAAGCGA 002160 002161 GACTGTCTCA AAAAAAAAAA AAAAAAAAAA AAGGAAATAA AATTAAGCCA TGGCCATTAT TTTTAGTAAC TGAGTGTTTG 002240 002241 AAGCTTATCA CTTTGTGGAG TGGCTGGAGC AAGTCACTTG CTAACACGAG CTTGGGTGTT TGTGGAAAGG TTTTTCTCCA 002320 002321 TTTTACATAT GGAGGCTCGG GACTCTCCGG GGCCCAGCTG GGCTCCCTCC ATCCCCTCCT GTCTCCTGCA TCCCCTCCTG 002400 002401 TCCCCAGCAT CGCCTCTTAC TTGGTCCACA TGATGGACGA TTCCCGGCTG TCTTCAGACC AAATGCGGGC TGTCCAGTCG 002480 002481 CCAACCGTCA GGAAGTTCTT CGGGTAGAAG GGGTTTCTCT GGAGGGCGTA GATGGGGCCA TGATGGCCCG GGAAGGTGCA 002560 002561 CACAATCTTC TCAGCTGACG TCTTGGCCTT GCGGTTGCAG GAGATGACGA TGCCCTGCTC GGTCCCCACC ATGAACTTGG 002640 002641 TGGGCTGTGG AAGGAGTGAC ACAGGAGGGG AAGACTCCAC GAACCATCAA TTCTGGGATT AGCGGGCATG GACAGGAGCT 002720 002721 TGCTTGGGGG GTCTGCAGGC GCTAGAAAGG CCCTCAGATC AAGCCTTGGC AAGGGCTGTG GCCCCTCCTG GAGAGCAGTC 002800 002801 CCCACTCTTC CCGGGCTCCT CAGACCCCAT CTTTTTGGAA GCTGCTCAAG GAGCCTGTGT TGAATGAAGC CCTCCCTGGC 002880 002881 TCCTCCAGTC CTGGAGGGTT GTCAGGTCAC TAGCCCCCTC TGCAGAGCAC CACTGTGTCC TCGATGCATT TGGCCATAAA 002960 002961 GATCCTGAAT GTTTGTTTAC AGAGAGAGTA AAGAAGACCC AGGGAGGGGA CGCAGGGTGG CCCACCCAGA TCACTCATGG 003040 003041 GATGGGCAGA GCCTTCCCTG GCAAGACAGT GACATTTGTC ATAGCATTGT CCAGGCTGGT GTCCCTGAGA ACTCAGAGCA 003120 003121 GGTGACCAAC CAGCACTCAG GAAGCTACCT GGCAGTCGAT GATGTAACTC GTCCCCCTAC CACTGGTGGG TGAGCTCTTT 003200 003201 GAGGGGCACG AGCTTGTCTG ACATGGGTCC ATCGCCCACG AACTGAGCTT TAGTAGTTAT TCACTTCACT GCGGACTGAA 003280 003281 TGCACAAAGG CTGGTCTCCT GACTCCTGGT CCAGTGCTCC CCTCGCGTCT CTGAGCATGA CCCCCTCCAT CACGCAATGC 003360 003361 CCTTCCTTGT TTACTGTTCT GTCTTAACTT CTGGGCTAGA CTGAACAACC TCCACCAGCA GGGCCTGAGC CTACAATGGT 003440 003441 GCTGTGTCCT CAGCATTCCA AATGGAAAGA ACAGCTGAGT GAGGTAGGGG AGGGGCACAC TGAGGGGAGG GCCTTTGTCA 003520 003521 ACGGGCTCAG ATGTCCTCTG CAGCTGGTGA ACCTGCCCCT ATAGAACTCC CAGGTTTTAG GCAGAGGTTG CAGTGAGCCG 003600 003601 AGATCATGCC ACTGCACTCC AGCCTGGCCT ACAGAGCAAG GCCCTACCTC AAAAAAAAAA AAAAAAAAAA AAAAAGAAAA 003680 003681 AAGAAAAAGA AAAAAGAAAA GAAAAGAAAA AAGAACTCCT AGTTTATTTA TTTATTTCTC GAGACAGGTT CTGGCTCCAT 003760 003761 TGCCCAGGCT GGAGTGCAGC GGTGCGATCT CAGCTCACTG CATCCTTGAC CTTCTGGGCT CAAGCAGTAC TCCCACCTCA 003840 003841 GCCTCCCACG TAGAGACCAC AAGCACACAC CACCAGGGTC AGCTAATTTT TGTATTTTTG TAGAGATGGA GTCTCCCTAT 003920 003921 GTTGTCCAGA CTGGTCTCAA ACTCCTAAGC TCAAGTGATC TGCACACATC GGCTTCCCAA AGTGCTGGGA TTACAGACCT 004000 004001 GAGCCACTGC ACCTGGCCCC CCAGCTTTTT TATTTTTATT TTTTTAAAAA ACATATTGTT TTATTATGCA GTTTTCTTCT 004080 004081 ACCAGAAAAT TACTAAAATG ATAAATATAA AATCTCTAGA AAATACCCAG AACATGGCCA GGTGTGGTGG TTGAGGCACG 004160 004161 AGAATCACTT GAACCTGGGA GGCAGAGGTT GCAGCGAGCC AAGATCATGT CACTGCACTC CAGGCTGGTC TTGAACTGCT 004240 004241 GGGCTCAAGT GATCCTGCCA CCTCAGCCTC CCAAAGTGCT GGGATTACAG GTGTGAGCCA CGGCGCCTTG CCTCACATTG 004320 004321 ATATTTTTCT TCTTTTTCTT TCCTTCCTTC CTTCCTTCCT TCCTTCCTTC CTTCCTTCCT TCCTTCCTTC CTTCCTTCTT 004400 004401 TCCTTCCTTC TTTCCTTTTC TTTCCCTCTC TCTCCCTCTC TTTCTTTCTT TCTTTCTTGG TAAAGACTGG GCGGGCGGTG 004480 004481 GGGGGGGTCT CATTATGTAC CCAGGCTGGT CTTAAATTCT TGGCCTCCCA AAGTGCTGGG ATTACAGGCG TGAGCCACCC 004560 004561 TGCCCGACCT GAACTTTGAT ATTTCTTTGT CATTCTCAGT GACTGAACAC CGAGACCATG CTTGTGCTCT GGTTTTCCAA 004640 004641 GGAGCCTGCT TTGACCTCAT TTTCCTCTCC AGTACCTCTT CCTTCCCCAG AGGAAGGCAG GTGACCAGCC TAGGGACCCC 004720 004721 GTGCCAGGCA GGGCCAGGAC CTGGGTTGGA GTCCAGGCCT CCCGATGTTG GTCCTGGGCG TGACCTTCCC CACAAAACAG 004800 004801 GGCTTTTCTG GAATTGTTCT GTCAAAAGAT TGCCCTCTGT GTTCAGCTGG GCCACTGGCC AAAAGATGAC TTGGTGCCAT 004880 004881 GATGACTATG GTGTCCTTCT TCGAGAAGCT CTGCTGCCCC CTGCTGGAAA GTTGTTGTAA AGGCCACACA CGTCTAGGAT 004960 004961 GGCTGCAGTG AGGGTGGCCT CCCTGGGCTG GTGCTGGGTT CCACGAGCAC CTGATATCCT AGCAATGGCC TGTCTTTAGC 005040 005041 CCTGGCTGCC CTGTCAATGC AAGTCGGGGA AGGGACAGCA AGGGACACTC ACCAAAGTAG ATTCGAACTC CAGGGAGATG 005120 005121 GCCCCCAAGG CATTTTCCAA CTGTTCCTTC TTGGTGATGT CCAAGATCAC AACTTCAGTG GGCTCGCTCA TCTTTCGGAT 005200 005201 GTCCCACCAC ATGACCTGGC GGGAGGAGGG GCGACAGTGA GACTTCGAGG CCCTGTATTT CCCCTGGCTT TTGCCTTCTC 005280 005281 CGCCCTCACC CCACCATCCT GGGGTCAGCC ACTGGGCCAC AAAGGATGGA GCTCCCGGCA ATTCGTGGGA GCAAATACAC 005360 005361 TTTGAGGATT GCTGTTCTGT CCACAGTTCC CACACCTGGC TGATCATCAG AGTCGCCGGC AAGCTTCATA CAACCCAGAT 005440 005441 GCTGAGGCCT CGCCCTCGAC CTACTGAATC AAAACCTCCA GGTGCAAGGC CAAGAATCGG TATATGCCAA GACTCCCCAC 005520 005521 AATAAGGCAA TATCCGGCAA TGTTAAAAAT GCATGTGTGC TCCGACCTAG AAGTCCCACT GCCAGCAATG TCTGCTGTAG 005600 005601 ATATATCCCC GCATGTGTGC AACAATCTGT GTATAAAGAA AAAAAAAAAA AAAAAAA |
Predicted Small Protein
Name | NONHSAT055781_smProtein_887:1171 |
Length | 95 |
Molecular weight | 10673.3969 |
Aromaticity | 0.063829787234 |
Instability index | 78.5063829787 |
Isoelectric point | 10.1738891602 |
Runs | 12 |
Runs residual | 0.00115633672525 |
Runs probability | 0.0452364128834 |
Amino acid sequence | MLVPPGLGLRIWILKKSLLHQARWLMPVIPALREAEAGESPEVRSLRPAWPTWGNSVCTK NTKISWVCWRAPVIPATQEDKAGESHELGRRRLQ |
Secondary structure | LLLLLLLLEEEHHHHHHHHHHHHHHLLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLEELL LLEEEEEEELLLLLLLLLLLLLLLLHHHLLLLLL |
PRMN | - |
PiMo | - |