NONHSAT055787

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT055787

Source

NONCODE4.0

Same with

,

Classification

sense

Length

841 nt

Genomic location

chr17+:72344729..72346620

Exon number

2

Exons

72344729..72345488,72346540..72346620

Genome context

Sequence
000001 TTTTATTCCA ACCCCTCAAT GGGGGACGGG AGACACATTC TTGAAACAGC TCATTGATGG TTCAGAATAT TCCTAATAGC 000080
000081 AGGTAAATGA TGCCAATGGT AGGTGCTGGG GCAAGACAGG AACAGGAGGT GGGGGTGGCC TGGTGGGGTC CAGTGGAACT 000160
000161 CTCTGGAGAC TGTGAGTGGG ACCCTGAAGG CTGGGAGGAC ATTCCAGAAA GGTGGGAGCA GGGAGAGCAC AGGTTCCAAA 000240
000241 GGCAGGAAGG GGATGGCGTC TGTGGTGGGT ATGGGGAGAG CAGGACAGGT CTTCAACTGG AGTGGGATGT TCATGCAGGA 000320
000321 GCGGTGAGCC CAGAGAAAAT CAGAGAGATG GGGGTGGCCC TTCAACAACG GGTGGAGGAA TGAGGACGTT CCCCGCAGGC 000400
000401 ATTAGGAAGC CACTGAAGGT TGATGAGATC TAGCAGTGAG TGTGACAGGA GGTTGTGGAA GTGGAGGAAA GGAGGCCATT 000480
000481 ACTGTCACCC AGAAAGACTG GGGGAGGCAG GGGGAAGAAA GGCCCTGCAG GCAGGCCTCG GTGAGTGCAC CTGGGGTGAC 000560
000561 TGCATCCCCT CCGCTCCATA CGTGTTCCCT GCAGGTGAAG CAGAACCTCC TGAACGTCTC CTACCACATC GCCCAGTACA 000640
000641 CCAGCATCAT CGCTGACCTG CGGGGCGAGA TCCAGCGACT CAAGCGCAAG ATTGATGAGC AGACTGGGCG GGGCCAGGCC 000720
000721 CGGGGCCGGC AGGATCGGGG TGACATCCGC CACATCCAAG CTGAGGTCCA GCTGCACAGC GGGCAGGGTG AGAAGGCTGG 000800
000801 CATGGGACAG CTTCGGGAGC AGCTCGCCAG CGCCTTCCAG G
[back to top]

Predicted Small Protein

Name NONHSAT055787_smProtein_86:382
Length 99
Molecular weight 11040.0102
Aromaticity 0.0816326530612
Instability index 50.5244897959
Isoelectric point 4.37066650391
Runs 16
Runs residual 0.0242227732214
Runs probability 0.0487822381205
Amino acid sequence MMPMVGAGARQEQEVGVAWWGPVELSGDCEWDPEGWEDIPERWEQGEHRFQRQEGDGVCG
GYGESRTGLQLEWDVHAGAVSPEKIREMGVALQQRVEE
Secondary structure LLLLLLLLLLEEEEEEEEEELLEEELLLLLLLLLLLLLLLHHHHLLLLLEEELLLLLEEL
LLLLLLLLLEEEEEEELLLLLHHHHHHHHHHHHHHEEL
PRMN -
PiMo -