NONHSAT055787
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055787 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
841 nt |
Genomic location |
chr17+:72344729..72346620 |
Exon number |
2 |
Exons |
72344729..72345488,72346540..72346620 |
Genome context |
|
Sequence |
000001 TTTTATTCCA ACCCCTCAAT GGGGGACGGG AGACACATTC TTGAAACAGC TCATTGATGG TTCAGAATAT TCCTAATAGC 000080
000081 AGGTAAATGA TGCCAATGGT AGGTGCTGGG GCAAGACAGG AACAGGAGGT GGGGGTGGCC TGGTGGGGTC CAGTGGAACT 000160 000161 CTCTGGAGAC TGTGAGTGGG ACCCTGAAGG CTGGGAGGAC ATTCCAGAAA GGTGGGAGCA GGGAGAGCAC AGGTTCCAAA 000240 000241 GGCAGGAAGG GGATGGCGTC TGTGGTGGGT ATGGGGAGAG CAGGACAGGT CTTCAACTGG AGTGGGATGT TCATGCAGGA 000320 000321 GCGGTGAGCC CAGAGAAAAT CAGAGAGATG GGGGTGGCCC TTCAACAACG GGTGGAGGAA TGAGGACGTT CCCCGCAGGC 000400 000401 ATTAGGAAGC CACTGAAGGT TGATGAGATC TAGCAGTGAG TGTGACAGGA GGTTGTGGAA GTGGAGGAAA GGAGGCCATT 000480 000481 ACTGTCACCC AGAAAGACTG GGGGAGGCAG GGGGAAGAAA GGCCCTGCAG GCAGGCCTCG GTGAGTGCAC CTGGGGTGAC 000560 000561 TGCATCCCCT CCGCTCCATA CGTGTTCCCT GCAGGTGAAG CAGAACCTCC TGAACGTCTC CTACCACATC GCCCAGTACA 000640 000641 CCAGCATCAT CGCTGACCTG CGGGGCGAGA TCCAGCGACT CAAGCGCAAG ATTGATGAGC AGACTGGGCG GGGCCAGGCC 000720 000721 CGGGGCCGGC AGGATCGGGG TGACATCCGC CACATCCAAG CTGAGGTCCA GCTGCACAGC GGGCAGGGTG AGAAGGCTGG 000800 000801 CATGGGACAG CTTCGGGAGC AGCTCGCCAG CGCCTTCCAG G |
Predicted Small Protein
Name | NONHSAT055787_smProtein_86:382 |
Length | 99 |
Molecular weight | 11040.0102 |
Aromaticity | 0.0816326530612 |
Instability index | 50.5244897959 |
Isoelectric point | 4.37066650391 |
Runs | 16 |
Runs residual | 0.0242227732214 |
Runs probability | 0.0487822381205 |
Amino acid sequence | MMPMVGAGARQEQEVGVAWWGPVELSGDCEWDPEGWEDIPERWEQGEHRFQRQEGDGVCG GYGESRTGLQLEWDVHAGAVSPEKIREMGVALQQRVEE |
Secondary structure | LLLLLLLLLLEEEEEEEEEELLEEELLLLLLLLLLLLLLLHHHHLLLLLEEELLLLLEEL LLLLLLLLLEEEEEEELLLLLHHHHHHHHHHHHHHEEL |
PRMN | - |
PiMo | - |