NONHSAT056021

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT056021

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2065 nt

Genomic location

chr17+:74523668..74541458

Exon number

5

Exons

74523668..74523915,74536587..74536655,74538635..74538715,74539111..74539203,74539885..74541458

Genome context

Sequence
000001 ATAGACAGGG CCGACTGCCG GCCAGGAGGA GGGTGGGGTG GGGAAAGCCC TCGGCCCTCG GAGCTGAGGG TGAGACCCAG 000080
000081 GCATGTGGTC CCGCCGACCT GCTGCCCAGC AGCCCGGATC CCCCGGGGCT GCCCTGGTGG CCAAGGCAGG TGGAGCTAGC 000160
000161 GGTCGAGGTT TCTGGACTGA GGCCCCTCCC CCAGTGCGGT CATCCCACCC AGAACTTCGC TCTGCCCCTG CCCATTCTAG 000240
000241 GACAGCCGAG AGCCCAGCGA CGTGGATGGG GCAGCTAGGG GCAGCAGCTT GGATGCGGAC CCTCAGTCCT CAGGCAGGGA 000320
000321 GAAAGAACCT CTGAAGTAAG CCCTCACCTC TGCAGGTGGG GCTCAGGCCC AGAGACTGGG ATCAGCTGGC TCAGGCAGCT 000400
000401 CAGGTCCTGG TTCGTCCCCT AGCCCAGGAG GATGCTGTGG GAGCTGCAGC AGCGGCAAGA GGGAGAATGG GGGGAAGCAG 000480
000481 CACTAGAGAA GTTCCCAGAG CTCATCCTGT CACTGGCTGC TCTGCTGAAA TTATCAATAA GAAATGCCAG TTGGATCTGT 000560
000561 GACATGTCTG CCTGCAGCTG GATGGGAGCA ACGGACAGCT TGTCCTCCGA ATGTGTTTTC TGTATGTGTG CAAGCGCGTG 000640
000641 TGTTCCAAAC GGGCAGTAGC GTGTGGGAAG GAAAAAGCCT GACACTTGTT TTTATCAATT TGCTGATGCT CAGTCCCGGC 000720
000721 GGCTGCCTCC TTTGCCCCCA GCTGCTCTGC CATTTCTCTC TTTTCAATCC TGCATGATCC TGAGCAGAGA TAAAAGCAGA 000800
000801 TTTCCGCTTC TGCTCCCAGA TCCAGGAGCA GACCCTGCAG GCAGCTGCTC CTGATGTCTC ACAGCTATTA GTCTTCAAAA 000880
000881 ACCCCCCGTG CCTCTGTGCA CACGCGTCTC TCCTCCCCAG CCAGCCCCCC TCCCAGCCCA GCGGCGATGT CTCTGCCTGG 000960
000961 CTGGCCCGTG CCCTTGACTT CCAGGCAGTA GAAGATGGAG TTCTCTAGAC AGCAGCACTT CAGCCGCCAC TCTGCCTCTG 001040
001041 AAGGGAAGGA AGGGAAAGGG TGAGGGATGC CGCAGAGCAG AGGGAACCGC TGGGGAGGCG CTCAGGGTGG GGGAGGAGGT 001120
001121 GCACCCCGCT GGGGAGGGCC TGCTGGTACC TCGGGGAGCC TGGCTGGGGT GTGTGCGAAG GCAGTTCTGT GGGAGCCTCT 001200
001201 CAAAGTAGGG CAGGCAGGAG GCAGGGGGAA AGTCACACTA GGGAAGGAGC CTGCAGAGGC AAAGCCAGAG CGCCAGCCTG 001280
001281 ACCCAGGCCG TGAGCCCGTG ATCGCCTGTC TCAGCTCCTG TCAGCCTGTC TCTCTCTTTG GAGGCATCGG CCTTCCTGGT 001360
001361 GACAGGCCTG TCAGGCTGAG GGCCAGAGGG CACTGTTCCC GGGACCCAGT CTGTGTTCCC CGATCCTATC TGCATTTATT 001440
001441 CTCTATTTGC CATGTTCCTG TCACCTCATC CTTGCTGCCA TTTCCGAGTT GCTCATCTCC TTCCACTGGT CTGAGGAATT 001520
001521 GTCAGGCCAA GGTCATGGAG CTGGCTCACG GCCCAGACGC ACTTCCCCAG GGCAGCGCCC CTCCACGCCA CTGTTCCGAG 001600
001601 AACCTGCGCA GGAGGTGGTG GCTGCTCCAG GGATCCATCC AGAGGAAGGG CGGGAAAAAG AGAGGAAGGG GCTGCTGGCG 001680
001681 GCCAGCGGGG CTGTGGCTGC CTGGGCTTGG AGGTTGCCTG GGCAGCTGGG GTGCCATGTG GGCCGGGTGG GGGGGCTGTC 001760
001761 TCCCCCAGGG AGCAGGCTGG CTTTGGTGGG AGCAGATTGT GTTTACACCT TCCCCGCACA CCCAGCCCAC GCTCGCCTCT 001840
001841 TATTCCCGGG GCCTCTCCCA CCCCTGGGCT CTCTGCGCAG TCTGCACATT TGCAGCTCCT GCTGCAGAAA GTTACCTCTC 001920
001921 TCAGCCTAGA GCTCCCCACA GAAGGCTCCT GGGACCCGGG TGCCCCTTCC TTGGCCCACT GGCTCCCATC ACAGGGCTTA 002000
002001 GTGTGAAGCT CAGGGCAAGG GTGGACCTTT AAATGGGGGA ATTAAATCCT GACTATGACA CTGTC
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Predicted Small Protein

Name NONHSAT056021_smProtein_431:658
Length 76
Molecular weight 8260.5018
Aromaticity 0.08
Instability index 65.144
Isoelectric point 4.29376220703
Runs 10
Runs residual 0.0156028368794
Runs probability 0.045354177707
Amino acid sequence MLWELQQRQEGEWGEAALEKFPELILSLAALLKLSIRNASWICDMSACSWMGATDSLSSE
CVFCMCASACVPNGQ
Secondary structure LHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLHHHHLLLLLLLLHH
HHEEEELLLLLLLLL
PRMN -
PiMo -