NONHSAT056021
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056021 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2065 nt |
Genomic location |
chr17+:74523668..74541458 |
Exon number |
5 |
Exons |
74523668..74523915,74536587..74536655,74538635..74538715,74539111..74539203,74539885..74541458 |
Genome context |
|
Sequence |
000001 ATAGACAGGG CCGACTGCCG GCCAGGAGGA GGGTGGGGTG GGGAAAGCCC TCGGCCCTCG GAGCTGAGGG TGAGACCCAG 000080
000081 GCATGTGGTC CCGCCGACCT GCTGCCCAGC AGCCCGGATC CCCCGGGGCT GCCCTGGTGG CCAAGGCAGG TGGAGCTAGC 000160 000161 GGTCGAGGTT TCTGGACTGA GGCCCCTCCC CCAGTGCGGT CATCCCACCC AGAACTTCGC TCTGCCCCTG CCCATTCTAG 000240 000241 GACAGCCGAG AGCCCAGCGA CGTGGATGGG GCAGCTAGGG GCAGCAGCTT GGATGCGGAC CCTCAGTCCT CAGGCAGGGA 000320 000321 GAAAGAACCT CTGAAGTAAG CCCTCACCTC TGCAGGTGGG GCTCAGGCCC AGAGACTGGG ATCAGCTGGC TCAGGCAGCT 000400 000401 CAGGTCCTGG TTCGTCCCCT AGCCCAGGAG GATGCTGTGG GAGCTGCAGC AGCGGCAAGA GGGAGAATGG GGGGAAGCAG 000480 000481 CACTAGAGAA GTTCCCAGAG CTCATCCTGT CACTGGCTGC TCTGCTGAAA TTATCAATAA GAAATGCCAG TTGGATCTGT 000560 000561 GACATGTCTG CCTGCAGCTG GATGGGAGCA ACGGACAGCT TGTCCTCCGA ATGTGTTTTC TGTATGTGTG CAAGCGCGTG 000640 000641 TGTTCCAAAC GGGCAGTAGC GTGTGGGAAG GAAAAAGCCT GACACTTGTT TTTATCAATT TGCTGATGCT CAGTCCCGGC 000720 000721 GGCTGCCTCC TTTGCCCCCA GCTGCTCTGC CATTTCTCTC TTTTCAATCC TGCATGATCC TGAGCAGAGA TAAAAGCAGA 000800 000801 TTTCCGCTTC TGCTCCCAGA TCCAGGAGCA GACCCTGCAG GCAGCTGCTC CTGATGTCTC ACAGCTATTA GTCTTCAAAA 000880 000881 ACCCCCCGTG CCTCTGTGCA CACGCGTCTC TCCTCCCCAG CCAGCCCCCC TCCCAGCCCA GCGGCGATGT CTCTGCCTGG 000960 000961 CTGGCCCGTG CCCTTGACTT CCAGGCAGTA GAAGATGGAG TTCTCTAGAC AGCAGCACTT CAGCCGCCAC TCTGCCTCTG 001040 001041 AAGGGAAGGA AGGGAAAGGG TGAGGGATGC CGCAGAGCAG AGGGAACCGC TGGGGAGGCG CTCAGGGTGG GGGAGGAGGT 001120 001121 GCACCCCGCT GGGGAGGGCC TGCTGGTACC TCGGGGAGCC TGGCTGGGGT GTGTGCGAAG GCAGTTCTGT GGGAGCCTCT 001200 001201 CAAAGTAGGG CAGGCAGGAG GCAGGGGGAA AGTCACACTA GGGAAGGAGC CTGCAGAGGC AAAGCCAGAG CGCCAGCCTG 001280 001281 ACCCAGGCCG TGAGCCCGTG ATCGCCTGTC TCAGCTCCTG TCAGCCTGTC TCTCTCTTTG GAGGCATCGG CCTTCCTGGT 001360 001361 GACAGGCCTG TCAGGCTGAG GGCCAGAGGG CACTGTTCCC GGGACCCAGT CTGTGTTCCC CGATCCTATC TGCATTTATT 001440 001441 CTCTATTTGC CATGTTCCTG TCACCTCATC CTTGCTGCCA TTTCCGAGTT GCTCATCTCC TTCCACTGGT CTGAGGAATT 001520 001521 GTCAGGCCAA GGTCATGGAG CTGGCTCACG GCCCAGACGC ACTTCCCCAG GGCAGCGCCC CTCCACGCCA CTGTTCCGAG 001600 001601 AACCTGCGCA GGAGGTGGTG GCTGCTCCAG GGATCCATCC AGAGGAAGGG CGGGAAAAAG AGAGGAAGGG GCTGCTGGCG 001680 001681 GCCAGCGGGG CTGTGGCTGC CTGGGCTTGG AGGTTGCCTG GGCAGCTGGG GTGCCATGTG GGCCGGGTGG GGGGGCTGTC 001760 001761 TCCCCCAGGG AGCAGGCTGG CTTTGGTGGG AGCAGATTGT GTTTACACCT TCCCCGCACA CCCAGCCCAC GCTCGCCTCT 001840 001841 TATTCCCGGG GCCTCTCCCA CCCCTGGGCT CTCTGCGCAG TCTGCACATT TGCAGCTCCT GCTGCAGAAA GTTACCTCTC 001920 001921 TCAGCCTAGA GCTCCCCACA GAAGGCTCCT GGGACCCGGG TGCCCCTTCC TTGGCCCACT GGCTCCCATC ACAGGGCTTA 002000 002001 GTGTGAAGCT CAGGGCAAGG GTGGACCTTT AAATGGGGGA ATTAAATCCT GACTATGACA CTGTC |
Predicted Small Protein
Name | NONHSAT056021_smProtein_431:658 |
Length | 76 |
Molecular weight | 8260.5018 |
Aromaticity | 0.08 |
Instability index | 65.144 |
Isoelectric point | 4.29376220703 |
Runs | 10 |
Runs residual | 0.0156028368794 |
Runs probability | 0.045354177707 |
Amino acid sequence | MLWELQQRQEGEWGEAALEKFPELILSLAALLKLSIRNASWICDMSACSWMGATDSLSSE CVFCMCASACVPNGQ |
Secondary structure | LHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLHHHHLLLLLLLLHH HHEEEELLLLLLLLL |
PRMN | - |
PiMo | - |