NONHSAT056038
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056038 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2435 nt |
Genomic location |
chr17+:74553846..74561430 |
Exon number |
3 |
Exons |
74553846..74553939,74557370..74557480,74559201..74561430 |
Genome context |
|
Sequence |
000001 GCGTTCTTTT CGAGGTCGGC CGCGTGGCTG GAAGACATGG CCACTCCAGT CGGTGTTGAG CACGGCGAGC AGTCTCAGGC 000080
000081 CTTTAGTGAT GATGGTGCAG TCAGCCTCAG TTTCCAAAGC CGGAAAAGGA TCCTCTAGTA GCCACGGTGT GGCAGCTGCT 000160 000161 CTGAACCAGG ACCTGGACCC GGACCCAAAG TGCCATGTCT TTAATGTTAG CTCCCAGCGA TGCCAGATGG GATCAGCACA 000240 000241 GCCCTGCCTC TGCTGCTAAT TGTTCCTCTA AAGTAATCGC CATGCGTTCT TTGGGCTTCA TCTTTAAAGG AATGAAGCAA 000320 000321 CTGAGATTAT TCTGGAAAAC CTTTTGGCAG TTAGTGAAAT TAGAGTACAA CTAAGAACAT TTTCAGACCT CCACTGTGGA 000400 000401 TGACCTGGGT ATAATCTCAC AAATCGATGG GACTGCAAGG ATTGTAAACT GAAATGAACA TGATTATACT CTGTTGGAAG 000480 000481 AGCCTAAGAG GAAACTGATG CCATGAGTTT CAGAGAGTAA TGCTTAACCC CAGTTACACA GGATGCCGTC TTGTGTTTCC 000560 000561 TCTTGTTTAg ttacccacta cagtgatttt gtgatctgct aatgggttgc cacccacaAC CATTGCTTTA GCACTTTTAC 000640 000641 TTCAAATCAA TGAAGGATTG ATAAAAGTTC TCCTGGTGTC TCCGCAGAGT GCCTTCCAGG AACAGATCTT TGCATAGAAT 000720 000721 ATCAGTGGTT TCCTTTTTTG TTTCAAATAG TGGTCAGAAA ATACCCAGTG TTGACTCACC AAGGCAATCA GCTTCCTTTT 000800 000801 TCCCtttttt tgtttttttt ttaacatttt atatttttgc tttattttat tttattttat tttattttat tttattttat 000880 000881 tttatttttt gagacggagt tccactctgt cgccaggctg gagtgaagtg gtacaatctt ggctcactgc aacctccacc 000960 000961 tcccgggttc aagcaattct cctggctcag cctcctgagt gctgggacta caggcgcgta ccttctttag tagagactgg 001040 001041 gtttcaccat gttggccagg atggtctcta tctcctgacc ttgtgatctg cctgcctcag cttcccaaag tgctgagatg 001120 001121 acaggtgtga gccatcagac ccagcatttt tttttttaat ttaaatttaa attttttttc atttttttga gaggtttttt 001200 001201 ttgttttgtt ttgttgttgt tgttgttgtt gtttttgaga cagtcttgct ctgtcaccca ggctgggagt gcagtggcat 001280 001281 gatctctgca acctctacct cccaggttca agcaattctt gtgcctcagc ctcccaagta actgggacta caggtgcacg 001360 001361 ctaccacacc tggctgattt tttttgtttt agtagagaca gggtttcaac catgttgccc aggttggtct caaactcctg 001440 001441 agctcaggca atccacccgc cttggcctcc caaagtgcta ggattacagg tgtgagccac cacacccagc TAttttttct 001520 001521 ttcgtttttt aattttaaag ttgggggggg gtctcaattt gttaccctgg ctggtctcga actcccggac ttaagcgatc 001600 001601 ctcTGGCTCC AAGCCCACTA CCAGTCTCAG GTTTCTTTAC TAAAAGATCA CTACCTTTTT Ttctcttatc tgctgccatg 001680 001681 tgagatgtgg ctttcacctt ccgccatgat tgtgaggcct tcccagccat gtagaactgt aagtccaata aacctctttt 001760 001761 gtaaattaAA AAAAAAAAAT CACTATTTAA GATACTAGGA TGGATTGTGA CTGTTGAGGA GTACTTACAT ATCCTACATT 001840 001841 TGACTACATT ATTTCCAAAC CAAGTATTCC ATCCAAAGGA ACATACTGCT ATCATAGAGA CCAAGGAGGG ACTGTTTAAG 001920 001921 GTTGCCAAGG TGAAGCGAGC TGAGAGGCTT TGTCCTCGTG CCAGTAACTC TGAAATCTCT CTTAATTCCT GCTGTCCAGG 002000 002001 CAGCAGAATG CCATGGTTTC CCCAAGTAGG TAGCTGCTTT AGCAGTTAAA GCCCAAATGT CTGTTCTGTT GATCAGAGGT 002080 002081 CTCTGAATTT CTGAAGTGGT GTTTCGTTTC TGGTGACTGA GTTAATCCTT TACAATCCCT CTTGTAAAGT GTGCTAATAG 002160 002161 AAAGAATCCA CCTTTCAAAG CTGCAGAACC AGACCGTGCC CTAAATTGAC CAACGTAACT GATGTGCCTC AGGAAGTCTC 002240 002241 TTGCCAGCTG TCCCTGTGAA GACCCCCCTC CTCCCCCCCA GCTGCTGCCT TGCACACTGA AGCATCTCAG ACTGTGCAAA 002320 002321 GCCGTGTAGT CATCAAGACA GTAAATCCCA GGGCTTGGTT AAGTGCTGTG TGATAACTTG TTTGGATGAG ACTTAACTTA 002400 002401 AAACCACTTA CAATAAACTT GGGAAACTAC CGTCA |
Predicted Small Protein
Name | NONHSAT056038_smProtein_194:373 |
Length | 60 |
Molecular weight | 6837.0056 |
Aromaticity | 0.135593220339 |
Instability index | 55.1830508475 |
Isoelectric point | 10.016784668 |
Runs | 7 |
Runs residual | 0.0258124708443 |
Runs probability | 0.0121508062684 |
Amino acid sequence | MSLMLAPSDARWDQHSPASAANCSSKVIAMRSLGFIFKGMKQLRLFWKTFWQLVKLEYN |
Secondary structure | LEEEELLLLLLLLLLLLHHHHLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |