NONHSAT056038

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT056038

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2435 nt

Genomic location

chr17+:74553846..74561430

Exon number

3

Exons

74553846..74553939,74557370..74557480,74559201..74561430

Genome context

Sequence
000001 GCGTTCTTTT CGAGGTCGGC CGCGTGGCTG GAAGACATGG CCACTCCAGT CGGTGTTGAG CACGGCGAGC AGTCTCAGGC 000080
000081 CTTTAGTGAT GATGGTGCAG TCAGCCTCAG TTTCCAAAGC CGGAAAAGGA TCCTCTAGTA GCCACGGTGT GGCAGCTGCT 000160
000161 CTGAACCAGG ACCTGGACCC GGACCCAAAG TGCCATGTCT TTAATGTTAG CTCCCAGCGA TGCCAGATGG GATCAGCACA 000240
000241 GCCCTGCCTC TGCTGCTAAT TGTTCCTCTA AAGTAATCGC CATGCGTTCT TTGGGCTTCA TCTTTAAAGG AATGAAGCAA 000320
000321 CTGAGATTAT TCTGGAAAAC CTTTTGGCAG TTAGTGAAAT TAGAGTACAA CTAAGAACAT TTTCAGACCT CCACTGTGGA 000400
000401 TGACCTGGGT ATAATCTCAC AAATCGATGG GACTGCAAGG ATTGTAAACT GAAATGAACA TGATTATACT CTGTTGGAAG 000480
000481 AGCCTAAGAG GAAACTGATG CCATGAGTTT CAGAGAGTAA TGCTTAACCC CAGTTACACA GGATGCCGTC TTGTGTTTCC 000560
000561 TCTTGTTTAg ttacccacta cagtgatttt gtgatctgct aatgggttgc cacccacaAC CATTGCTTTA GCACTTTTAC 000640
000641 TTCAAATCAA TGAAGGATTG ATAAAAGTTC TCCTGGTGTC TCCGCAGAGT GCCTTCCAGG AACAGATCTT TGCATAGAAT 000720
000721 ATCAGTGGTT TCCTTTTTTG TTTCAAATAG TGGTCAGAAA ATACCCAGTG TTGACTCACC AAGGCAATCA GCTTCCTTTT 000800
000801 TCCCtttttt tgtttttttt ttaacatttt atatttttgc tttattttat tttattttat tttattttat tttattttat 000880
000881 tttatttttt gagacggagt tccactctgt cgccaggctg gagtgaagtg gtacaatctt ggctcactgc aacctccacc 000960
000961 tcccgggttc aagcaattct cctggctcag cctcctgagt gctgggacta caggcgcgta ccttctttag tagagactgg 001040
001041 gtttcaccat gttggccagg atggtctcta tctcctgacc ttgtgatctg cctgcctcag cttcccaaag tgctgagatg 001120
001121 acaggtgtga gccatcagac ccagcatttt tttttttaat ttaaatttaa attttttttc atttttttga gaggtttttt 001200
001201 ttgttttgtt ttgttgttgt tgttgttgtt gtttttgaga cagtcttgct ctgtcaccca ggctgggagt gcagtggcat 001280
001281 gatctctgca acctctacct cccaggttca agcaattctt gtgcctcagc ctcccaagta actgggacta caggtgcacg 001360
001361 ctaccacacc tggctgattt tttttgtttt agtagagaca gggtttcaac catgttgccc aggttggtct caaactcctg 001440
001441 agctcaggca atccacccgc cttggcctcc caaagtgcta ggattacagg tgtgagccac cacacccagc TAttttttct 001520
001521 ttcgtttttt aattttaaag ttgggggggg gtctcaattt gttaccctgg ctggtctcga actcccggac ttaagcgatc 001600
001601 ctcTGGCTCC AAGCCCACTA CCAGTCTCAG GTTTCTTTAC TAAAAGATCA CTACCTTTTT Ttctcttatc tgctgccatg 001680
001681 tgagatgtgg ctttcacctt ccgccatgat tgtgaggcct tcccagccat gtagaactgt aagtccaata aacctctttt 001760
001761 gtaaattaAA AAAAAAAAAT CACTATTTAA GATACTAGGA TGGATTGTGA CTGTTGAGGA GTACTTACAT ATCCTACATT 001840
001841 TGACTACATT ATTTCCAAAC CAAGTATTCC ATCCAAAGGA ACATACTGCT ATCATAGAGA CCAAGGAGGG ACTGTTTAAG 001920
001921 GTTGCCAAGG TGAAGCGAGC TGAGAGGCTT TGTCCTCGTG CCAGTAACTC TGAAATCTCT CTTAATTCCT GCTGTCCAGG 002000
002001 CAGCAGAATG CCATGGTTTC CCCAAGTAGG TAGCTGCTTT AGCAGTTAAA GCCCAAATGT CTGTTCTGTT GATCAGAGGT 002080
002081 CTCTGAATTT CTGAAGTGGT GTTTCGTTTC TGGTGACTGA GTTAATCCTT TACAATCCCT CTTGTAAAGT GTGCTAATAG 002160
002161 AAAGAATCCA CCTTTCAAAG CTGCAGAACC AGACCGTGCC CTAAATTGAC CAACGTAACT GATGTGCCTC AGGAAGTCTC 002240
002241 TTGCCAGCTG TCCCTGTGAA GACCCCCCTC CTCCCCCCCA GCTGCTGCCT TGCACACTGA AGCATCTCAG ACTGTGCAAA 002320
002321 GCCGTGTAGT CATCAAGACA GTAAATCCCA GGGCTTGGTT AAGTGCTGTG TGATAACTTG TTTGGATGAG ACTTAACTTA 002400
002401 AAACCACTTA CAATAAACTT GGGAAACTAC CGTCA
[back to top]

Predicted Small Protein

Name NONHSAT056038_smProtein_194:373
Length 60
Molecular weight 6837.0056
Aromaticity 0.135593220339
Instability index 55.1830508475
Isoelectric point 10.016784668
Runs 7
Runs residual 0.0258124708443
Runs probability 0.0121508062684
Amino acid sequence MSLMLAPSDARWDQHSPASAANCSSKVIAMRSLGFIFKGMKQLRLFWKTFWQLVKLEYN
Secondary structure LEEEELLLLLLLLLLLLHHHHLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHL
PRMN -
PiMo -