NONHSAT056342
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056342 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1632 nt |
Genomic location |
chr17+:78104222..78105853 |
Exon number |
1 |
Exons |
78104222..78105853 |
Genome context |
|
Sequence |
000001 gtacaatgtt ggaatagacg tggcaagagc attcttgttt tgttcccaac cttagcgggt aatgctgtgg tttttcatcg 000080
000081 atgctgttta tcaggttgaa gcagccccct tccattctta ttttctatct tgaaaaggtg ctggattttg tccaatgctt 000160 000161 tttctgcatc tgtaaatcat tatgtggact ttgtccttta ttctattgat agggtgtatt acattgacag atttttggat 000240 000241 attaaaccaa ctttccattc ctgcgataaa tcccactttg tcagtgtaca atccttttta tatgttgctg gatttgtttt 000320 000321 gccagttttt tgaggatttt tacatctata ttcatatgat attgatctag ttttttttgt ggtagctttg ttttggtatc 000400 000401 aggtaatgct ggcctcaggg tgagttggga aatgttctgc cttatatttt ttgaaagatt tcgtgatcca gcactttggg 000480 000481 aatctgacgg gggcagatca caagatcagg agtttgagat cagcccggcc aacacagtaa aacgccgtct ctactaaaaa 000560 000561 tacaaaaaat taaccagatg tggtggcagg cacctgtaat cctagctact gggaggctga ggcaagggaa tcacttgaac 000640 000641 ccaggaggcg gaggttgcag caagccaaga ttgtgccact gcacaccagc ccaggcaaca gtgtgagact ctgcgtcaaa 000720 000721 aaaaaaaaaa aattgtgatg gtgataattc tgtaaaagtt tggcaggatt cacaagcctt ggctttcctt tgttgaaagt 000800 000801 ttggttactg atttaatctg tttgtcctag gaatttctcc attttatcaa ggttcatctg ttggcaaaca atccatggca 000880 000881 ctgatacttt gtattctgta cagtcggctg tgccatcacc tctttcattc ttgattttag ttatttgaac ctatttttcc 000960 000961 ttagacttgc taaagatgtg tcaattttgt tgatcttttc aaagaatgaa ccgttggttt tgttgatttt ctctattatt 001040 001041 tttctattca tttatttcta ctctcatctt tattatttcc tttcttctgc ttcctttggg tttagcttgc ttttctttta 001120 001121 gtttgaggtg agacagacaa tctgcaataa atgtaattat tgacacggtt gttttcaacc tactaccgtt ttgtatttgt 001200 001201 ccatctcgta agttctctgt tcccttttcc ttccttttca ggattcttag attaagtatt ccttagaact cttattttgt 001280 001281 ctcctacgtt ggctgtttat ttctgtttca catttttgta ttgctttaaa ggttcatacc taaaaattgc ttaacacttt 001360 001361 tatatatgtt tcacatcttt aattcatcac aatctgcctt caagtaatag tgtaagaatc ttgacagtat acttccatta 001440 001441 ctcctttctt cggtgctgtg ctattttcgt catacatttt atgtctatgt attatTTTAA ACAATCTTAC TACAAAGAAA 001520 001521 CATGCCAACA GCATCAACAT TACCATTCTA TTTCTATACT TTAGACATAC CTCAAAGGGT CAGGACACTC TAGCTCTTGG 001600 001601 TTAGAACCCT TTTTATGTGG TTTTTCTTTT AG |
Predicted Small Protein
Name | NONHSAT056342_smProtein_80:208 |
Length | 43 |
Molecular weight | 4994.1821 |
Aromaticity | 0.190476190476 |
Instability index | 46.21 |
Isoelectric point | 8.35894775391 |
Runs | 5 |
Runs residual | 0.0571127185051 |
Runs probability | 0.0376435258789 |
Amino acid sequence | MLFIRLKQPPSILIFYLEKVLDFVQCFFCICKSLCGLCPLFY |
Secondary structure | LEEEEELLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLL |
PiMo | iiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooo |