NONHSAT056342

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT056342

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1632 nt

Genomic location

chr17+:78104222..78105853

Exon number

1

Exons

78104222..78105853

Genome context

Sequence
000001 gtacaatgtt ggaatagacg tggcaagagc attcttgttt tgttcccaac cttagcgggt aatgctgtgg tttttcatcg 000080
000081 atgctgttta tcaggttgaa gcagccccct tccattctta ttttctatct tgaaaaggtg ctggattttg tccaatgctt 000160
000161 tttctgcatc tgtaaatcat tatgtggact ttgtccttta ttctattgat agggtgtatt acattgacag atttttggat 000240
000241 attaaaccaa ctttccattc ctgcgataaa tcccactttg tcagtgtaca atccttttta tatgttgctg gatttgtttt 000320
000321 gccagttttt tgaggatttt tacatctata ttcatatgat attgatctag ttttttttgt ggtagctttg ttttggtatc 000400
000401 aggtaatgct ggcctcaggg tgagttggga aatgttctgc cttatatttt ttgaaagatt tcgtgatcca gcactttggg 000480
000481 aatctgacgg gggcagatca caagatcagg agtttgagat cagcccggcc aacacagtaa aacgccgtct ctactaaaaa 000560
000561 tacaaaaaat taaccagatg tggtggcagg cacctgtaat cctagctact gggaggctga ggcaagggaa tcacttgaac 000640
000641 ccaggaggcg gaggttgcag caagccaaga ttgtgccact gcacaccagc ccaggcaaca gtgtgagact ctgcgtcaaa 000720
000721 aaaaaaaaaa aattgtgatg gtgataattc tgtaaaagtt tggcaggatt cacaagcctt ggctttcctt tgttgaaagt 000800
000801 ttggttactg atttaatctg tttgtcctag gaatttctcc attttatcaa ggttcatctg ttggcaaaca atccatggca 000880
000881 ctgatacttt gtattctgta cagtcggctg tgccatcacc tctttcattc ttgattttag ttatttgaac ctatttttcc 000960
000961 ttagacttgc taaagatgtg tcaattttgt tgatcttttc aaagaatgaa ccgttggttt tgttgatttt ctctattatt 001040
001041 tttctattca tttatttcta ctctcatctt tattatttcc tttcttctgc ttcctttggg tttagcttgc ttttctttta 001120
001121 gtttgaggtg agacagacaa tctgcaataa atgtaattat tgacacggtt gttttcaacc tactaccgtt ttgtatttgt 001200
001201 ccatctcgta agttctctgt tcccttttcc ttccttttca ggattcttag attaagtatt ccttagaact cttattttgt 001280
001281 ctcctacgtt ggctgtttat ttctgtttca catttttgta ttgctttaaa ggttcatacc taaaaattgc ttaacacttt 001360
001361 tatatatgtt tcacatcttt aattcatcac aatctgcctt caagtaatag tgtaagaatc ttgacagtat acttccatta 001440
001441 ctcctttctt cggtgctgtg ctattttcgt catacatttt atgtctatgt attatTTTAA ACAATCTTAC TACAAAGAAA 001520
001521 CATGCCAACA GCATCAACAT TACCATTCTA TTTCTATACT TTAGACATAC CTCAAAGGGT CAGGACACTC TAGCTCTTGG 001600
001601 TTAGAACCCT TTTTATGTGG TTTTTCTTTT AG
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Predicted Small Protein

Name NONHSAT056342_smProtein_80:208
Length 43
Molecular weight 4994.1821
Aromaticity 0.190476190476
Instability index 46.21
Isoelectric point 8.35894775391
Runs 5
Runs residual 0.0571127185051
Runs probability 0.0376435258789
Amino acid sequence MLFIRLKQPPSILIFYLEKVLDFVQCFFCICKSLCGLCPLFY
Secondary structure LEEEEELLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLL
PRMN LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLL
PiMo iiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooo