NONHSAT056350

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT056350

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4412 nt

Genomic location

chr17-:78174029..78178870

Exon number

2

Exons

78174029..78174044,78174473..78178870

Genome context

Sequence
000001 GTGAGGCAGC TCTCGGCCCA GAAGCACGTG CTGGAGCCTG CGGAGGAGAG GATCCTGAGG GTGGGTGAGG CTGCGGCAGC 000080
000081 CCCCAGCCAG CCTACCCTGC CCCGGGAGGG ACTGGGTCTG CTTTGCTCAC TGCAGCAGCC CCAGCACCTA GAATTCCAGG 000160
000161 GGCACAGGCT CAGCGGTCAC AGGACTCACT CCCAGTTCCA TAGCCCCTGG CTGAGCGGCT CCTTTGCACG GGGGTTACAC 000240
000241 AGCTCTGTGG CTCTCCAGGG ACTGCTTTGC AGCCTGCAAC TTAATCCTGT TTCCTATAGG CCCAAGGGAG GATGGCGGAA 000320
000321 GCCAGGGTTT TCTTCCTTCC AAAGGATCTG GGAGAGTGGC ACCCTTCTCC TCAGCCATCC TCCAGGGCAC AGGGTCCTAG 000400
000401 CCCTCCCTCT GTCCTGTACT CCTCTCCTGA AATTTTTTTT TTCCTGAGAC AGAGTTTTGC TCTTATTGCC CAGGCTGGAG 000480
000481 TGCAATGGCA CCATCTCGGC TCACTGCCAC CTCTGCCTCC CGGGTTCAGG CGATTCTCCT GCCTCAGCCT CCCGAGTATC 000560
000561 TGGGATTACA GGTGTGCGCC ACCACACCCA GCCCCATGAT TCTTGAAGAC CAGATCCTGG CCTAAATGAG TGGCATCCCC 000640
000641 CTGCCCCAGC TGACCAACTA GCAGCAGCTC CCAAAGCCCT TCACCCGCTT GGAGCCAGCG GCCCCTGTGC CAGCTCACCA 000720
000721 GGCCTCACCC TCCATCCTGC TGGGGTCCAA CTGGCCCCTG TCAAAGGACA AACGCAGAGG GCTGGCCTTG GCTTTGTCCA 000800
000801 TACTGACGAT GCGGACCAGC TTCTGTGGTC CCCCAGAAGA TGGCTAAAGG AGGGACAGAG AAAGGATGAG GAGGAGCTGT 000880
000881 TGAAGCCATC AACAGGAATG GGAATTCAGG GGAGATGATT GGCACTAGGG CGACCTGGGA GTGATGCAGA GGCGCAGATG 000960
000961 CTCTGAGAAC AGCCTGAGGT GTGTCTGCAC TTGTGCAAGA GCCTGCAGGC TGGGCAGGGG CTGCAGACCC TGCCCTGGTT 001040
001041 TGAAGGGGTG CAGAGGAGAG ACAGGTGGGG TTACCCTCCA ATCAGCAGCC CACTCTCCAC ACAGTGCCTC CTGCCACCCT 001120
001121 GCCAGCACCG AGCCCCTCTT CCAGCCCACC CCAGTGGGGT CCAGGCCCCT CCCTGGAGCC TCACCTTGCG GGTCACGGTG 001200
001201 CACTGCTGAG TCATGTCCTG GATGAGGGCT ATGAGCTGCT GCTGAGCCCT GCAGAGACCA GCAGAGGCCC TGACCCAGCT 001280
001281 GCCTCCTGCC AGGTGAGCAG GGCAGGGGAG AGCCGAGCAG GGGAGAGTGG GGGAGATGGC CGGGTGGGAG AGAAGGGCCT 001360
001361 CCACCTAGAG CTCCACACAT CCCTTTGCTG CAGGCTGGAG CGCTCCATCC TGGCGGCCAT GCCAGTCTCC AGAGCTTTCA 001440
001441 AAAGACTCCA GGGCCTCGGC CCACCCCTGG AGATGCTGAT TTACTTGTCC TGGGGCGGGA CCCAGGGGGT GCTGTTGAGC 001520
001521 AGCCAGCGTA CAGGGCCCCA CTCCAGGACC TCAATATTCA TGGTGGGTCC CTGGCCTGCA GCCTGGAGTC ACCGAGAGAG 001600
001601 CTGTTAGAAA TGCAGAGTGC CAGGCCTCTC CCTGGACCTG CTGGCTCCGA TCCCCAGGGG ACTTGAGTTT GCAATGAGTG 001680
001681 ATGGGGGTGC TGAGCTCAAC ACTCCTGCTT TCTAGCACTG TGCGTTCCGT GCACTTGAAA CTTGGAGCCT CCCATAGGCT 001760
001761 GATCTAGAAC AATGGTTTCC TTTTCTTTTT TTTTTTTTTT GAGACAGAGT CTCACTCTGT CGCCCAGGCT GGAGTGCAAT 001840
001841 GGCTCAATCC CGGCTCACTG CAACCTCTGC CTCCGGGGTT CAAGTGATTC TCCTGCCTCA GCCTCCTGAG TAGCTGGGAT 001920
001921 TACAGGCACC TGCCACCACG CCCAGCTAAG TTTTTTGTGT TTTTAATAGA GACAGGGTTT CACCAGGTTA CCCAGGCTGG 002000
002001 TCTCGAACTC CTGACCTCAG ATGATCCACC CGCCTCGGCC TCCCAAAGTG TTTGGATTGC AGGTGTGAGC CACCATGCTC 002080
002081 GGCCTAGAGC AGTGGTTTTC AATGGAGCAA GGCAGGGGGC AATGTCACTC CCCAGGGAGG GTGACCAGCT GTCCCTGCTT 002160
002161 GCCCAGGACC GAGGGGCTTC CCTGCAAGTG GGGCTTTCAG TGCTAAGACC AAGACAGTCC TAGGAGAACC AGGGGACCCT 002240
002241 TGGCAACCTA TAGAGACATT TCTGGTTGTC ACAGCTGGGG CATGGGAGTG CTCCCGGCAT CCTGGGTAGG GCGGCCAGGG 002320
002321 ATGCTGCTCT ATATCCTGCA GTGCCCAGGA CGGCCCCACC ACAGACGGGG ATGCAGCCCC AAACGTCCAT GGTACCAGAG 002400
002401 CTAAGAAACC CAGAGCTAAG AAACCCAGAT CTAGAATGTT CTAGAATGAA CATTTCATTT GCAATATATA AAGCATCCAT 002480
002481 CACAAAGAAA CAACATCTTC AGCAGTGATC TTGGCAGGCT TCCCTCCTTA GGGGGGTCTC ACCACGCCCA CCCTCTATTG 002560
002561 CTGGGCAGGA GGAGGAAGCC GAGGCAGGCT GGGTGCCATT TCCCTGTGGG CCTCTCTGGG GACGCACCGA GCTCGTGGCA 002640
002641 GCTGCTCACC TGGAGTAGTT GGGGATGGTG CCGTGCGCGG CAGTATCCTT CATGGTGTAA GAGTTCACGC GGTGGGCATG 002720
002721 CCAGCAGCCG CAGCCCTGGA ACATGGTGTC GGTGACGTGC AGGACCTCGT TGCAATGCAC CTGCAGCTCC CCTTTGGCCC 002800
002801 TGCCCTCCAT GGCCAGGTTG ACCCGGATGT AGAATGAGTC CCCCGAGGTC GCCACTTTGG CCTCCAGGTC CTGGAGTAGC 002880
002881 CTCTTATAAC CTGATAAAAG GGGACATGAG CCACAGATGA GCCACAGATA CGAGCCTCTG CGAGGAAGGT TGCAGAAAAT 002960
002961 TAAAGTAGGA GAGAAGGAAG GACCCTCCCA GTCTCAGAAG CTGCTCTGGC ACTGTAGTCA GTGGGTGGGA GGTTTCCAGC 003040
003041 TGGCTTGGGG GCCTCCTGGG GACCTGGGGC ACAGCCTGGC TGATCCTCTC TTGGCTCTGG GGGTCCCTGG CTGCTGGGCG 003120
003121 TGCAGAAGAA CCACCAGGGA CTTAAGGGTC ATGGAGTCTG GCCAGGCAGC TGTGCACACG AGAGGAGTGG TATGTGTACC 003200
003201 GTCCGTGTTG ACCTTCACAG ACAGGCAGCA GAAGCCGTCC ACCCTCCTGA GAAGCCCCAC GGCCTCCTCC AGGGTCGTGT 003280
003281 CCTCCAGGAC TGCCTTGAAC AAGGGCTCTG AGGCTTCGTA ATCAACCTGA GGGCAAGTCG AGAAGGTCAG TCTCTTTCCC 003360
003361 CCGGGACTCT GAATCCAGCC AGAAGGCAGA AGGCGCTGAG GGCACTGAGG CGAGGCGCGG GCCAGCCCTG CCGTAGGACC 003440
003441 ACTGCCTGCA CGCCTTGGTC AAAACAAAGC CACACACCAG AGCCTCTGTG GGGCCTTCAC ACCTCTAGTG ATGCGTGCTA 003520
003521 CACATAGTGC TGGCCAGAGA GTCAACTGCC AACCCTTCCC CAGTCGAGAT CGGGGGTTCT TTGTGATAAG CACTTTCCTG 003600
003601 TCTTGAAAAA GAAAAGAAAA GAAAAGAAAG AACCTCGGTT CTAGAACATT CAAGAGCATT CTAGATAGAG GTTTCTTAGC 003680
003681 CTTGGGATCA TTCTGTGCTG CTGCGGGCTA TACCGGGCCC TGCAGGATGC TGAGTGGCAT CCCTGGCCTT CACCTACCCG 003760
003761 ATGCCCTGGC TCTCCACCCA CAGCCTTCCC CACTGTGAAG GCCCACCCCC CAGGGCTTCC ACCATCCACT TCATTTCTTC 003840
003841 TCAATATTGT TCTAAGCTTA GGAGAGTAGA TATTTTTACA ATAAAAATTA AGATGTGTTT TAACACCATT AGAATCTAAT 003920
003921 TGGCCCCCTT AGGATATTGG GACTATCTCC CTGAACATCG TCAAGGGGCT CTGTTGCTTG AACTACCTCA GAGCTGATAA 004000
004001 TTGGGAACCT TAAGAGCAGG GTTCCCCAAC CCCTGGGCCA CATACTGGTA CTGGTCCATG GTCCATCAGG ACCCGGGTCA 004080
004081 CACAGCAGGA GGGGCGTGGT GGGCGAGTGA GCATTACGGC CTCAGCTCCA CCTCCTGTCA GCTCAGCACA GCAGTAGATT 004160
004161 CTCAGAGGAG CATGAGCCCT ATCGTGAACT GTGCACGTGA GGGATCTAGG TTTCACGCTC CTTATGAGAA TCTAATTCCT 004240
004241 GATGATCTGT TACCGTCTCC CATCACCCCC AGATGGGACC GTCTAGTTGC AGGAAAACAA GCTCAGGGCT CCCACTGATT 004320
004321 CTGAATTATG GTTCAGTGTA TGATTCTTTC ATTACATATT ACAGTGTAAT AATAATAGAA ATAAAGTGTA CAATCAAAAA 004400
004401 AAAAAAAAAA AA
[back to top]

Predicted Small Protein

Name NONHSAT056350_smProtein_311:598
Length 96
Molecular weight 10608.0776
Aromaticity 0.136842105263
Instability index 91.8926315789
Isoelectric point 8.84234619141
Runs 13
Runs residual 0.00779113137174
Runs probability 0.0283586754175
Amino acid sequence MAEARVFFLPKDLGEWHPSPQPSSRAQGPSPPSVLYSSPEIFFFLRQSFALIAQAGVQWH
HLGSLPPLPPGFRRFSCLSLPSIWDYRCAPPHPAP
Secondary structure LLEEEEEEELLLLLLLLLLLLLLLLLLLLLLLLEEELLHHHHHHHHHHHHHHHHHLLHHH
HLLLLLLLLLLLLEEELLLLLLHHHLLLLLLLLLL
PRMN -
PiMo -