NONHSAT056676

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT056676

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1683 nt

Genomic location

chr17+:80231640..80236543

Exon number

3

Exons

80231640..80232359,80232768..80232949,80235763..80236543

Genome context

Sequence
000001 ggggcgagCG CTCCAGGCCT CCTCCCGACC CTGCGCCGTG CCCAGCCCCT CTGCCCTCCT GTTACCCCGG GACCTCGGGC 000080
000081 CGCCAGCCCC TTCCACGTGC AGGCTCCTGC TGCTCTCGCG GGGGCTTTTC GTGTGTCCCC CGAGATGTCG AGGAAGCCAG 000160
000161 GTGAGTTCCT CGCGACAGGC GGTGCCCTTT GCAGGAGGGG ACAGGTAGCT GAGGCGTGGA CAGAGTGACA GGCCAGGCTC 000240
000241 AGGGGACACA GGTGAGACCC CCTCACTGGG CTGCCAGTTC CCGGGCTTGG GGCATCCCAG TACGTCAGCG TCTGCGGCCT 000320
000321 TACCTCCTGA CACCTAAGGC CAGAGACAGA GCAGGCCCGC GCCCTGGGAG GTCCTGATGT CCAGCCTGAA GATTGAGGAC 000400
000401 AAAGCCACCA CCTTTCACAA AATGAGGCCA GACCACCTGC CTCCCTCCAG TCCCTGCGGC CTGGAGACGG AGTCAACATT 000480
000481 CTTATCTGTG TTGGATCTGA ATGTTCCTCC TTGCAAAGGA AACAAGGAGT GGACGTTCAG GCTGATGGCC AGCTTCAAAG 000560
000561 ATCGGGGCCT TTGATTCCCA TCACTGGGAA GAAAGCCCTT CAGACAAGCC CCCCCAGGCT GCAGGTGCAT GGGGACCTTG 000640
000641 AAGAACCCGT CCCCATGGTC CCACGTCCAT GTGTCTCGAG ACCTGTCGCA TCCTCGCTGA AACTCAAGAA TGTGAAACAG 000720
000721 AGTCCAGCTC TCCCACGGGT GGCTGTGATC CTTCTTCCTG GGGAGTCCTG CTGTCCCTGA CTAGGGGCAC CTGCCCACCT 000800
000801 GTCAGCTGCT CCTCCCTCGG CTGGTCCTCC TGGGCTCTGA TGGCCCCAAC ATTTCTAGCT CTTCTCACCC ATAGTGCCCC 000880
000881 AAGCTTCATG CAGCTGCGGC AGcagcatga acagactgag ataGCGGCTT ACATGTAACC GGAAGCTGCA GAAAAACATC 000960
000961 TTCAGACAGC TGAGACGGCT CCCAGGACTC GTGCCTGGCA CAGACACCAT CTGCCTGGCA GGGCAAAGAA AGGCGTCTGT 001040
001041 GAGTGTGGGA GGATTCCGAG TCTAACACCC TGAGCCCAGC CAGGAAGGGG CCAGGAAGGC CTCCTCGTGA ACAACGAATG 001120
001121 AAACAGATCC CAGATCTCAG ACAGGGCGGG GAAGGGGAGG GGTACCATGT CAAGCAGCAC TCTGTGTAAG TCGGCACCTG 001200
001201 CGCACACTTG CATGCAGACG TGTGTATTGT GAGTGTATGG ACATGTTAGA Aatggatgtg tgcatgtgtc tgcatgtgtt 001280
001281 tgtgcattta tgcacagaca ctacacgggc atgcacatca tgtacgtata tgtttgcata tgtgcacgtg tgtgtacgtg 001360
001361 catgtgttcg tgtgtgcatg cacacagcat gcgtgtgtgt gtatacttgc atgcatgcTA ACATATGGTG GAGAATAAAT 001440
001441 AATGATCACC TCTCTGGAAC TGGGGAAAGT AAGTGTTAAA CAGATTTTCG ACAGGAAATG CTGCTGCAAG GAATTCGTCC 001520
001521 GTAGGCTAGC ACTACAACCT GGAGGCAGGG AGCAGTGAGG AGTGGAAGTC TTCCCATCAG AAGTGAGGAA ggctggatac 001600
001601 ggtggctcac accagtaatc ccagcacttt gggaggcaaa ggcaggagga tcacttgagc ccaggagttt gagaccagcc 001680
001681 tag
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Predicted Small Protein

Name NONHSAT056676_smProtein_668:937
Length 90
Molecular weight 9656.9181
Aromaticity 0.0674157303371
Instability index 78.4348314607
Isoelectric point 4.62567138672
Runs 9
Runs residual 0.0420797532496
Runs probability 0.0247011717601
Amino acid sequence MCLETCRILAETQECETESSSPTGGCDPSSWGVLLSLTRGTCPPVSCSSLGWSSWALMAP
TFLALLTHSAPSFMQLRQQHEQTEIAAYM
Secondary structure LLHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLLLLHHHHHHHHH
HHHHHHHLLLHHHHHHHHHHHHHHHHHHL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHH
HHHHHHLLLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTT
TTTTTTiiiiiiiiiiiiiiiiiiiiiii