NONHSAT056876
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056876 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1912 nt |
Genomic location |
chr18+:908033..911026 |
Exon number |
2 |
Exons |
908033..908364,909447..911026 |
Genome context |
|
Sequence |
000001 GCGTCAAGGA ACCCACACTC CGCATCTGCC ACTCCTAGAG CCGGGACTAG CTCCCGATCC TAGCAGTTGC TCTCGAGATC 000080
000081 ATCCCGGGAG TTATTGGCGA GTTCTGGGCC TCTGGAGGTT TCCCTGTCAG CCTCCCCGGC CGCCGAGGGG GCGCGCGCCC 000160 000161 AACAAGGGGG TCTCTAGCGG CCACCTGGGG ACAGAAACAG TGACCCTGGG CGCGCACTTT GCCTCCCCGT TAGAGATGTC 000240 000241 GCCCACGGGA TCCTTAACGA GGCCTACCGC AAAGTGCTGG ACCAGCTGTC CGCCGGGAAG CACCTGCAGT CGCTCGTGGC 000320 000321 CCGGGGCGTG GGTGGGAGCC TCGGCGGCGG CGCGGGGGAC GACGCGGAGC CGCTCTCCAA GCGCCACTCG GACGGGATCT 000400 000401 TCACGGACAG CTACAGCCGC TACCGGAAAC AAATGGCTGT CAAGAAATAC TTGGCGGCCG TCCTAGGGAA GAGGTATAAA 000480 000481 CAAAGGGTTA AAAACAAAGG ACGCCGAATA GCTTATTTGT AGCGATGGGT TACCAGCTAC CCTGTGTATA CAGCCCTGAC 000560 000561 GCAATGAAAA GTCGTTTTCC AAACTGACTC AACAGTCATC GCTCGTGTGT TCTATCCAAA CATGTATTTA TGTAATGAAG 000640 000641 TAAAGCCATT AAATGAATAT TTTGATAATA ATATTGTTTT TCTTTCTACA AAGCACTAGA GAATGCACAG ATATACTTTG 000720 000721 TGGACCAATT ATTGatatat attataaata tatataaaga atatatatat atatatatat atatatatat ataAAGTATA 000800 000801 GAGAGAAGTT CATACAAAGC GTGCACAAGG ATTGAAAATT CGCCCGAGCT GTTTATGTTT TTATAAAAAT AAATAGAAAA 000880 000881 GTAGACAATC ATTGTTTTGA ATATTACTCC TATTTTTGTA AACTGGAATT AAAAGGATAG TATTTTTATC CATGACAGGC 000960 000961 CTGAAGATAT TACTACTTAC CATTTGCTAC TGTACATAAA CAATGATGCC CTGCTCCAGG GAGATTTTGA GGTAAAGATA 001040 001041 TGGAGAATTG CTGAAGGGCA TTCTTTCCCA GTGAGTCTCT GGGGCAGGCT GCTTCAATCC CAGCCTAACT CAACTGGGCT 001120 001121 CTGTCCCCCT GGTTGGGTGG CAATTCCAAT ATTTCTGCTT TCTTTGATTC TCCTTTTATG TGTAGTTGTC TCTCTTCAGA 001200 001201 CTCTCAGCCC AGAAGAAAAT TCTCCTGATA AAACAACAGC TCGATCCAAA TTGTGCTTCT CCCCAGAATT CACGCCTCTC 001280 001281 CCTAGGAGAA GAGTTGAGGA ACTGTACAGA AAAGGGCGGC TTCGTTAGAC CGCTCTCTTT TCTGTACTTC CTGAGTGGCC 001360 001361 AGGGAATCTA ATATCCCCAA ATTAGGGCAA TTGGAACAAA GTGAAGGACA TAGAGGTATA TTGGAAGAGG CAGAGCCTGA 001440 001441 GGTGGTAGGA GGAGGACCCT GGAAATGGAC TGGTTTGAGA TTGCCCCAGG TCTGGGAAGC TGAGGGCAAA TCCAGTCCCA 001520 001521 ATGGTCCTGA CTTTGGGCGC TGGGTATTGG AAATGGATGC AAAGTACAAT GTGTTTTTCT CCAGTGCTGT CCATGCTTCT 001600 001601 CATCTTGTGA AATGGCCAGG ATCCTCTCCT TTGAAACCTG CTCTGTAGGA GCTACCCTTT TCCTTTGTGG TTTTATGGAG 001680 001681 ACCTCTCCTT CCTACCCTCC TGCACTGTTT AAGTACTGTT TACCATTTTT CATTCACTTC TCTTAAACTT GTGAATGCTT 001760 001761 CTCACTTTTT TTTTTTGTTT GATGCAGGCA CTTATTGTAA ATTTTAGAAA CCCCTCTGTA GCCACTAGTA AGTAATTATG 001840 001841 CACTAAATAT GAACCCTTTG TTTCTTGTTT ATTGAGTTTG TAGGTAAAAT GTATTTTTCT ACATTATTGC TT |
Predicted Small Protein
Name | NONHSAT056876_smProtein_1520:1609 |
Length | 30 |
Molecular weight | 3321.1111 |
Aromaticity | 0.137931034483 |
Instability index | 49.375862069 |
Isoelectric point | 7.95343017578 |
Runs | 5 |
Runs residual | 0.0271551724138 |
Runs probability | 0.000105988341282 |
Amino acid sequence | MVLTLGAGYWKWMQSTMCFSPVLSMLLIL |
Secondary structure | LEEELLLHHHHHHHHHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |