NONHSAT056889
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056889 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1890 nt |
Genomic location |
chr18-:1268312..1359630 |
Exon number |
4 |
Exons |
1268312..1269853,1272443..1272512,1358727..1358761,1359388..1359630 |
Genome context |
|
Sequence |
000001 AATGCCTTAA AGAAAGGACT GATCTCCCCT GAAGAAGAGA GAATTCTGCC TCTAGATTGC TTACAATTTG AACTGGAACA 000080
000081 TCAGCTGTTC TCTAGGTCTT AAGTCTGCTG CTCTAACCTA CAAATTTTGG ACATGCCAAT CTCCACAGTC ACATGGGCCA 000160 000161 ATTCCTTAGT TTCTCTGGAG AATCCTGACT AATGTATGCA ATGTCTTTAT TTCATCCTCA TTCTTAAAGG ATATTTTCAT 000240 000241 CAGCAACACC ACACCCTCCT GATCACCATA GCTTTATGGA TGCAATTGTC CAATTATTGG TGAAATTGTC ATTTCATGCT 000320 000321 ATTGGCTATT TGAAATTCCT CCTCTAATTT CAGAATAAAT CACTGAAATT GACATCGGCC AGTCTGAATT TCAAGAAATT 000400 000401 ACCTGCTGAA GACAAGAGGG ATCTCTTCTT CAGATTTGCA GTCTGGGGAA GACACAGCCT CTACTGTACT TTAGAACCTG 000480 000481 AGATATGGTG GTGGAGGGAG CCCTGGGTCG AGTGGTAAGA TTCACCCTTA GGTTAGTATT GACGTAAGGT GACGAGGAGC 000560 000561 TGTAGACAAA AGATTGTAAC CATAAGAACT TCATAGTTTT TGTATTTTCA CCGAGCTTAT ATTTGGTGTG TTTTTTGTCT 000640 000641 TTTCTTTATG ATTATCAATA AAATGCTTGA AAGGAGATGA GGTTGGGGAA TAATTTTTGG GAATACCACA AAAGACACTT 000720 000721 TTGTGATGGA AATCCTTAAA AAGACACAAT CCATTACCTC ATTGGGTTCA AAAGGCAATT GTGAACTACT GTGGAGTTTG 000800 000801 GAAAGAAGCA ATGAGGTAAT CAAGGATACT GTTGACAATC TAGCTTATCC TATGGATGGA AGGAAATTGA AACTAATGGA 000880 000881 GGCGAGGCTG GTAAAACAAT AGGGTTTGAG ACAATTCTGT GGCATTAGAA ATGAAAGAGG AAGGTGAATC CGGGAGACGG 000960 000961 AGCTTGCAGT GAGCTGAGAT CGCGCCACTG CACTCCAGCC TGGGCGACAG AGCGAGACTC CATCTCAAAA AAAAAAAAAA 001040 001041 AGAAAGAAAG AAAAGAAAGA GGAAGTAATA ATCTGTGAAA TTTTTCCTTA GGAACTTATT GGCAATTTAA AAATGAATTT 001120 001121 GTTAAGCCAT GCTGGTTCTG ACCCAAAAGC CATTCCCCAG CCTTCCTCAC TCCCCTCTTT CACTACTGGC AGAGATTGTC 001200 001201 TCTCATTTTA CAAGCTGAAA ATGCCAGATG CTTGCTTTTA CAGTCTTCCT TACACCCAGA GCATGTGCAT ATGTTTAAAC 001280 001281 GGTCAAGAAG AAGTCATAAC ATGGGTGTCT GGGAGAGCTT TTATCCCACA AAAACAACAC TTCACTCAAA AAACAAACCA 001360 001361 AACAAAGAAA AATTCTCCTT CCTGCCATTG GATGTGAGGC TCAGACCTCT AGTAACCATT TTGTGACCAC AAAGCAACAA 001440 001441 GCCTGAGGAA AAGTCCTACA CGCTGAGCAA CAGGCAGAAA TATTGCCATC GCTGAGTTGC AGAAACAAAT CTAGAGATGT 001520 001521 TTTGCTTCTG TAATTATTTT TTATGGGAGA TTACAAGTGG GTTTACTGTT CACTTTTCAA ATCTTATTTC TCTATGATGT 001600 001601 TTAGCTTGGG TAAATTTTAC CTTAAATCCA CTTTTTTATG TAAGGTAACA TATTTGTCGG TTTCAAGGAT TAAGATGTGG 001680 001681 GCATACTTGG AGGCCATTAT TTTGCCCACC ACAGGTGAAA AAGGAAGTGT TATTCTTAAA TCATTTGGAA GGATCTCTGT 001760 001761 GTAAATGCAA GAGCGAGACA AGAAAATGCT GTCATTCTTT TGATATGGAC TCGAATTTCC ACTTCATGGT TGTCTGCTTC 001840 001841 CTTTTTAGAG TATTATTTAT CCTCCTAATA AAAAGAAAGT GAAATTTCCC |
Predicted Small Protein
Name | NONHSAT056889_smProtein_1112:1396 |
Length | 95 |
Molecular weight | 10632.1342 |
Aromaticity | 0.106382978723 |
Instability index | 64.4778723404 |
Isoelectric point | 8.91461181641 |
Runs | 12 |
Runs residual | 0.00115633672525 |
Runs probability | 0.0353220867927 |
Amino acid sequence | MNLLSHAGSDPKAIPQPSSLPSFTTGRDCLSFYKLKMPDACFYSLPYTQSMCICLNGQEE VITWVSGRAFIPQKQHFTQKTNQTKKNSPSCHWM |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHEELLLLLEEEELLLLLLEEEEEELLLEE EEEEEELLEEELLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |