NONHSAT056959
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056959 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3409 nt |
Genomic location |
chr18-:2943213..2946621 |
Exon number |
1 |
Exons |
2943213..2946621 |
Genome context |
|
Sequence |
000001 AGACTGGTGC TAGCAACACG GGATTGGCTA ACGCATCCTC TTGCTGTTCC CGGTGTTTGG GCCTTGCCTG TGACAGTGGG 000080
000081 AAAAAAAATG GCCTTGCTGT GCTACAACCG GAGCTGCGGT CAGCGCTTCG ATCCTGAGAC CAATTCCGAC GATGCTTGCA 000160 000161 CATATCACCC AGGCGTTCCA GTCTTTCACG ATGCATTAAA GGGTTGGTCT TGCTGTAAGA GAAGAACAAC TGATTTTTCT 000240 000241 GATTTCTTAA GCATTGTAGG CTGTACAAAA GGTAGACATA ATAGTGAGAA GCCACCTGAG CCAGTCAAAC CTGAGGTCAA 000320 000321 GACTACTGAG GAGAAGGAAC TATCTGAATT AAAACCAAAA TTTCAGGAAC ACATTCAAGC CCCTAAGACA GTAGACGCGA 000400 000401 TAAAAAGACC AAGCCCAGAT GAACCAATGA CAAATTTGGA ATTAAAAATA TCTGCCTCCC TAAAACAAGC ACTTGATAAA 000480 000481 CTTAAACTGT CATCAGGGAA TGAAGAAAAT AAGAAAAGAA GACAATGATG AAATTAAGAT TGGGACCTCA TGTAAGAATG 000560 000561 GAGGGTGTTC AAAGACATAT CGGGGTCTAG AGAGTCTAGA AGAAGTCTGT GTATATCATT CTGGAGTACC TATTTTCCAT 000640 000641 GAGGGGACGA AATACTGGAG CTGTTGTAGA AGAAAAACTT CTGATTTTAA TACATTCTTA GACCAAGAGG GCTGTACAAA 000720 000721 AGAGAAACAT GTGGACTAAA AAAGATGCTG GGAAAAAAGT TGTTCCATGT AGACATGACT GGCATCAGAC TGGAGGTGAA 000800 000801 GTTACCATTT CAGTATAGGC TAAAAATTCA CTTCCAGAAC TTAGTCGAGT AGAAGCAAAT AGCACATTGT TAGATGCGCA 000880 000881 TATTGTATTT GAAGGAGAGA AGGAATTTGA TCAAAATGTG AAATTATGGG GTGTGATTGA TGTAAAGCGA AGTTATTAAC 000960 000961 TATGACTGCA ACAAAGATTG AAATCACTAT GAGAAAAGCT GAACCGATGC AGTGGGCAAG CCTTGAACTG CCTGCAGCTA 001040 001041 AAAAGCAGGA AAAACAAAAA GACGACACAG CAGATTGAGT GGGAGATGGG AGGAAGGCTA TTACGTATTT CAGAATTTTT 001120 001121 AATACTGTGT GAAGTGGTGG CTTGCTGCTG TCATCTTTTG TTTTGTTGTT GTGTTACTGA ATGTGGCATT TCAGGGTTAA 001200 001201 CATTAGGTTC TTAAAAGCCA AAGTCAGTTT ATCTTTTTGT GCCTCTCATC TTTCTTTCGT GTTATGTAAG ATTGATTATT 001280 001281 CGTTTCTCCC TACTGGTAGG AACCATAGTT GTGTCCTGTA CTTGAAGAGG CTGAAAAATA GCCCATAACC ATAATTGCAG 001360 001361 TATTTCTTTG TATTTCTCTG TTAAGCAAAG AAATATTAAG GAACTTTTTT TATGTCTTTG TATTATTCCA TAATTAGTAA 001440 001441 AGCTAATTGT GAATGTCCAA TTTTAATGAA ATGTCCAATT TTAATCAGTT TTTTTCATGG ATTTGTGTTC TTACGGTACT 001520 001521 TGAAAATATT TAAGGAAGAG ATGAAGCTCT GCAGTTTTTT CTATGTGGGA TGATTGCTTT TTTAAGGAGG ATTAATTCTG 001600 001601 AGGTAGTATA GTAAGTAAAG GGGAATATAT GAATTGTTAA CAAATTAGGA TTTGTTTACA ACTACTTGAA TTTTTAAATT 001680 001681 ATGTCAAAAC TTACATTACT TGCCAAGCAG TATGATGTAA GAGTATAGGA AACATAAATA AGAATACAGA GGTATCAATT 001760 001761 TGATTAAAAT TCACCATTTT ATAAGACTAA GCAATAATCT TAAAAACCTC TTTCCTGAAT ATTTAAATGT GTTTGTATGG 001840 001841 TGTTATGACT AATTGTTACT GATTTACAGA CTAAGCCCTC TTAAAACCTT TAGTTAAATA TAAAAAGAAA TTATATATAT 001920 001921 CTTGCCTCCC TGATGGAAAA CTATGTAAAA TTGTAGACTT AAAAGGTTTG TGGAGGCCGG GCGCGGTGGC TCATGCCTGT 002000 002001 AATCCCAGCA CTTTGGGAGG CCGAGGCGGG CAGATCACGA GGTCAGGAGA TCGAGACCAT CCTGGCTAAC ACGGTGAAAC 002080 002081 CCCGTCTCTA CTAGAAATAC AAAAATTAGC TGGGCGTAGT GGTGGGTGCC TGTAGTCCCA GCTACTCAGG AGGCTGAGGC 002160 002161 AGGAGAATGG CGTGAACCTA AGAGGCGGAG CTGGCAGTGA GCTGAGATTG CGCCACTGCA CTCCAGCCTG GGCGACAGAG 002240 002241 CCAGACTCCG ACTCAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA GTTTGTGGAA ATACATTAGG ATATCAGAAA 002320 002321 ACTAAATATA TGGAGTTGCT TTATGACTAT TACATGTTAA ATAAAATAGC TTGTTTTGGA GTTTTTTTTT TTAAAGTCAT 002400 002401 GAAGAGCTTC ACAATTCTAG TGATACAGTG TTGATTATAT ATTGTGCTTT ATTTATTTTA AATATAGGTA ACACAGAATT 002480 002481 AGATCGTTTG GATAGGTTTT GATGCAGTGC AGAGCTTAAG AAGAAAAATT AGGAAATATT CTGAAGGCCA GAACTCTGGA 002560 002561 AGAACTTAGA AAGTTTGGGA ATAAATTAAA CTTACATAGA TTTAAAATTA AAAGGGGTTT ATTTCCCAAA CCCCTTGAGT 002640 002641 CTTTTCTTTT CCTTGGCATT TGCGGAATTC TTACAAAGAA AAATTTACAG AAGTACTATT TTCGTTAATA AAGCATATAT 002720 002721 ATCATTCTAC TACCATTAGC AAATAACTTA GTTGTAGTTA ATATAATTGT TAAAAGGTTT AGCTCTGTTA CAAATAAAAA 002800 002801 CAAAAAGATC TGGCAACCAG ACTCATGATG TTACACTACC ATGACAAGAA ACTCTGGGCA GTGAAAGTTG GACCCACATG 002880 002881 GAGTACATAA ACATCTGATA CTGGGAGATG TATTTAAAAT TTTTCAAGTT ATATTCCATG ATTTAGGAAC CATTTAGAGA 002960 002961 CATGAAGTCT TTATGGGTTG GGGGAAAGGT TGATACTTAG TTTGATTAAA GGTAATGATT AATATGCCTT TTTGTTAATA 003040 003041 CTTCTTTCTG AGGCTGTCTT CCCCTAAACA GTATCTTAAT CTGTTAAATG TAATTGAAAT ATTATTTGAA GCAGTGAGTT 003120 003121 ATTGTAACCT CAGATTAGTT ACATTGATCA AAACATTGAT TTATACACAC ACACACACAC ACACACACAC ACACGCAGCT 003200 003201 TTTATATTTA GTCTGGTTAC ATTAGTGACC ATGGTATTTC CTTTCTTACT TCTTAAGGAG CCTTTGAATT TCTTGTCCAG 003280 003281 ATAAAAATCT GAATAATATT TATCTTAGAC TCATACATAA AGGGACACAG TTACCGTTAG GTAGCATATG TTTTACTATC 003360 003361 GGTTTGTCAA AAAAGTTAAT AAAAAATGCT TATTGATTTG TTTCTCTAA |
Predicted Small Protein
Name | NONHSAT056959_smProtein_1085:1213 |
Length | 43 |
Molecular weight | 4467.4555 |
Aromaticity | 0.047619047619 |
Instability index | 53.8904761905 |
Isoelectric point | 5.47589111328 |
Runs | 9 |
Runs residual | 0.038125376733 |
Runs probability | 0.0336905532984 |
Amino acid sequence | MGGRLLRISEFLILCEVVACCCHLLFCCCVTECGISGLTLGS |
Secondary structure | LLLLLHHHHHHHHHHHHHHHHLLLEEEEEEELLLEEELEELL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooo |