NONHSAT056980
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056980 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2609 nt |
Genomic location |
chr18-:3347675..3383509 |
Exon number |
8 |
Exons |
3347675..3347986,3348131..3348615,3357285..3357307,3357313..3358623,3365895..3365924,3368559..3368686,3369929..3370107,3383369..3383509 |
Genome context |
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Sequence |
000001 TTACAACAAC TTTGTATGAG CTCACTTCCC ATCCCTCTTT TTTGCCTTTA AAAACTTGCT TGTAACAAAG GCTGGGCGGA 000080
000081 GCTCACATTC AACGTTTCTT GGGTCTAAAT CTTCCGGGCA GCTGTCTACA CTTTGGCTCA GATAGGGTCT TGTTCTGTCA 000160 000161 CCCAGGCTGG AGTGCAGGGG CATGATCACT GCTCACCCCA ACGTCAACCT CCTGGATTCA ACTGATCCTC CCAATTGAAT 000240 000241 GATTGTTCTG AAATACCCTC TGCAGGACTC CTTTGTGATA TTCATCAAAT ATTTCTTGCT CTCCACCCTC CAGACACATG 000320 000321 TGATTTTCAT GGTGTGATAT ATAGTCAACC CCACATCAGA TCACCTGGAA TCATTGTCGA TATTGGGTAC AACTTGCCTC 000400 000401 ACCCCAGAAT TTCAAGGAGT GTGACCTGCG AGTCTGTATT TTTACCAGGT ACCATCTGCT GACTTCCCAC ATCAGAAGCA 000480 000481 GAATGATCTT CAACCCAAGA CACAGGCAAA GAGAGCATCT AACTGCTTAA AATGAGAGCA GGAATGGCTG TTGGCTTAGA 000560 000561 TAGATGGCAC CCCAGAGTCC TGAAAGAACT TGCAGATGTG ATCACAGGAC CATCTGAACC GGAGAAACCG GGGGGAATGG 000640 000641 AGAGACAGCA AAAGACCGGA GATGGGTAAA TGAGTTCCAG ATTTTCCAAC ACAACAGGAA AGGTGACTTA CGGGTCTGTG 000720 000721 TGCTGGTTAC ATTTAATGTT GAGCTTCAGC AAAACTCCGG AACAGATGAT TGAAGGGGCT TTGTGCGTAT TTATTAAAGA 000800 000801 AAGTAATGAT TGCTAGGCAC TCTCATGAGT TCCCCGAAAT CTGAGCTCGT GCCAGACAAC CTTGTTTCCA TGCCATAGCA 000880 000881 CTCCACTGGA CGAGCAGGAA AATATCATAG TCAGAAATGA CTTATTTTAG CAAGACACTT AGCAAAAGTC TCACGTGACA 000960 000961 TCCTTGTGGA CCGAGGAATG TGGACTGGTG GTTGCTTTGT GTCCACATTT CAGGGGACCC ACTCAGGGTC CTCCTTAGGC 001040 001041 CCCTGTCTCT ACACGAAACC TCAGCCACAA AGGTGCAAGG GAAATAAACT GACTGTCACA GAGACAATTG CTAATGAACT 001120 001121 TTTAAAAAAC GAATGACTTA TTTTTTAAAA TTTTTATTTT TCAATTAACA GAACTAAATT TATTCTCAAT GTTATAACTA 001200 001201 TGGAAAATGG AAAAAATTGC TACCTCTTAC TTTCTTATTC CTTTTAATTG AATATATTTG AGGTGTACAG CATATTTTCA 001280 001281 TATACTTACC TTTTTTTTTT TCCGTGAGAG ACAGAGCCTC ACTCTGTTGT CTAGGCTGGA GCATAGCAGT GCAACCATGG 001360 001361 CTCACTGCTG CCTCCAACTC CTGGGCTCAG GTGATCCTCC CACCTTAGCG CCCCCGAGTA GCTGAGACTA CAGGCACATG 001440 001441 CCACCACATC CAACTAATTT TTTTTTCTGT AGAGACAATC CTCCTGCCTC AGCTTCCCAA GGAGCTGGGA CTATGGACAC 001520 001521 GCACCACCAT GCTCAGCTGA TTTTTAAATT TTTTGTAGAG ACGGGGTCTC ACTGTATTTC CCAGGAGTGT CTTGAACTCC 001600 001601 TGGACTCAAG CAATCCTCTG CCTTTGCCTC CCAAAGTGTT GGGATTTCAG GCATGAGCTA CTGTGCCTGG CCAATATACT 001680 001681 TATCTTGATA TGCATATACA TAGTGAGGTG GTCACTATAG TCAAGTAAAT TGATATACTG GTACATTATC TCTATAGCTA 001760 001761 CTTTTCCTCT GTATGTGTGT GTGTGTGTGA GTACCTAAAA TCTACTCTCT TGCTTCAGGG TATAATGAGG TAGGAAGGCT 001840 001841 TAGTCATCTA GGGAAACTAT ACCATGTACT TATTATCTTT TTAGTGTTGG GATTAGGGTT GCCAGATAAA ATACAGGATG 001920 001921 CCCCACTAAA TTTGAATTGC TAAACAACAG GGACATACTT AGACACAAAC ATTATTCAGT GTTTATCTGA AATTCAAATT 002000 002001 CCGCTGGGTG TCAGGCATTT CTGTTTGCCA ACTCCAGCAG CCCCAGCTGG GAGGTGCCCT CTGAGCTCCT CTCCCTGGAA 002080 002081 GTCCTCTTAC CTGCTGTCAG CTGAGCAATT TGCCAGGCTT GCTTTGGGAG CTGGCTTGAA GTTATTTGGA TTTGATGACT 002160 002161 CTCTTTCTCT TCTGTACAGG AATCTACTTA CCAAGATGGC AGGAGCAAGT GGTTATCAGA GCCTGCTCTC TAGAAATACA 002240 002241 ATTAAACAAG CAGCCCCTGT CTCTTTTTCT CCACTTTCAG TCTTGGGGAA GGGATTGGAA TATGTGAGCA GGAGAGAAGG 002320 002321 GTCATGTTGG AGCAGCCAGG ACTCAGAGCC TTTCCGCAGA CTGAGTCTGG ATCCTTTCCT TCAGCCTCCA GGAATACTCC 002400 002401 CGGCTCCACA CCCAGAATGG TAATCCAGGC AAGGGCTCTG GTGTGTGGCC ACACTGCCAC CTATTACCTG CGGGTCCAAA 002480 002481 TGCAGTGACT CAACTTCTCT GTGCCTCTCT TTCCACATGT ATAAAATGAG GATAATGTTG CTATTGTAAG AATTGCATCA 002560 002561 ATTAATAAAC AGCACTCAGT GAATCTGTTA GCCCATCAGT GGATCGCGC |
Predicted Small Protein
Name | NONHSAT056980_smProtein_2195:2422 |
Length | 76 |
Molecular weight | 8200.1966 |
Aromaticity | 0.0933333333333 |
Instability index | 93.3813333333 |
Isoelectric point | 7.94073486328 |
Runs | 9 |
Runs residual | 0.0289361702128 |
Runs probability | 0.0397652554516 |
Amino acid sequence | MAGASGYQSLLSRNTIKQAAPVSFSPLSVLGKGLEYVSRREGSCWSSQDSEPFRRLSLDP FLQPPGILPAPHPEW |
Secondary structure | LLLLLLLLLLLLLLHHHHLLLLLLLLHHHLLLLEEEEELLLLLEELLLLLLLLLLLLLLL LLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |