NONHSAT057030
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT057030 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3220 nt |
Genomic location |
chr18+:4264602..4296000 |
Exon number |
3 |
Exons |
4264602..4264901,4275301..4275379,4293160..4296000 |
Genome context |
|
Sequence |
000001 GAGCCAAATC CCGACAGGAC TTGTTACTTT CACTTGCTCT TTTTTCCTCC CATTTTAGCA GCCAAGGATG GGAATTACAC 000080
000081 AGCGAAATGC AGGCTAATCA GCTAAATCTA GATTAAATAT GCTAGTCCTT GGGGACCTTG AGCTGAATTA ATGGAAACCG 000160 000161 AGGTTTTTAA TGTTCCAGAC TAATTTTGGA AGCTCACTTC CAGCAGAGGC AAACTTGAGG CTGTCCAAAG GGAGCAGATG 000240 000241 GCAAGGCTTT CTCCAGGTGC ACCAACCTTT GAAACAGCCC TCGGCAAAAC CATGAGGAAG GAATGCTCTT CCCTTAGAGA 000320 000321 TCCTCGTGGT GAATTCCCTC ATTTCCTTCA AGTCTGCTCA AATGTTACTT CTCAAACAGA GCAAGAAGAT CGAAGCAAAT 000400 000401 GAACAAAGGT GGGATCCGGT TCCAATAATG AAGAATGTGA TGACTACATG TATACCATTC TGGAACAGAG AAAAGACTGC 000480 000481 CTGCAGCAAT ATCTCTAAAA ACTACCTGTG GCAGACTCAG TGGATGGTCA AGTTTGGCTC TGAAACAAGT CTCCTCATTT 000560 000561 GTCAGAGAAA GGACAGAGAA GATCCAGTTT ATGTGATTAA TTCAATGATA TTAGTAGAGA TCATAGATAC AATGATCAAA 000640 000641 ATAAGAACAT TGCTTTTTGC AAAATCAGAT TAAACTGCAC TCCAAAACAA TACTGAATCA TGTAAAAGCA GAACTTCCTC 000720 000721 TCAGAGATTT CTGTATGCAA AGACAAAACA ATTAGGTCAC AGGATACCAT GTTCTTGAGA CTGTATGTCC TTACTAAGTT 000800 000801 TCATTTTCAT TCAGATATGT ACAAGACCAT TTGGTATTTG TAAAGAGGTT ATGTTTATCT GTGTTTTCCT GAATATAGAA 000880 000881 TGAATATCTT TATGACAAAA AACTTTAGCT CAGAAGAATC TTTATCGCAT TTAAAATAAT TAACAACTAT AGTGCATAAT 000960 000961 GTATAATTCA AGGGTTTTCT GTAGCCCATT TCCCATCTAC CCTGTCCCTG TCCCCATACT CCTTCCTCAC CTCCACCCAA 001040 001041 CCTCCACCAG AGATAATTAA GCTTTTAAGA ATGAGATTGA TCACTTAAAA GTAATATATT TTTACTTTAT TTCTTTAATC 001120 001121 CATGTTTAGA CTTTCCTACC TGCCAAAACT TTGTATCTTT TAAACTTGGT ATTCTACTTC TTTCTCCCAT CTCAAACTAT 001200 001201 ACGTAAATCA GTGTGTTAGA AATTCCAGTG AGTTTAATTG AACAGAAAGT TGGGGTATCT TGTATCCCCT CCTTTTTTTT 001280 001281 CTTTTGGGAC ATAACCTTTG TTTCCCACTT GTGATTCCAG AATCTATCTT GGTATGATTC AACACCTTTT ATCAGCTGCT 001360 001361 TCTAAACAAC TTTCACCACC ATATTGCCTC CTCATTCTTC CGAAAATACA CTATTTTCTA GTCAGGCCAA ACTATACATT 001440 001441 CTTTCCAGAG CTGACCACAC TTGTTATGTT ATATTCCCAG CTAAATGCCT TCTGTAACAT TTACTACTTA TCCTTCTGGA 001520 001521 TACAACCCCA ATGTCACCAC CTCCTTGAGA GCACCCCTGA TTCCACAGGG TTGAGAGTCA GGGTGGCCTG GGAAGACCAC 001600 001601 ACATGTCCTC TGCCATCATT CAGAGGTGGG TATAAGTGAA ATGGGAGAGT TCCCTGGTCC CCCTCACAGG ATGTGTGACA 001680 001681 GGGGTATGGC TCTCTTCTTG GCTGCTATGA GCTCAAAGCC CTTACAAGAG GTGGAGCATG CAGATGAGCA GGTGCAGGAA 001760 001761 CCAGAGCGAG AGCTTTTGGG GTCCCGCCCC ACAGCAGTGT CTAGGGGTGA GTTTCTGTGA TTCCCAAAAC CCAAGTGGGC 001840 001841 ACATGTTACA GTGTGCTCTT CTAGTGTTGC TGTCCAAGTG TTAACTAGCT TAGTGGACCC TCTGCCTTTT TGCAAGGGCA 001920 001921 GAGGGCCAAT GTGACAGCTT TCTGTATTCT GAGCTCTTAT CCAGCATCCA GGAAGAATCA GGTGACACAG GGACTTGAAG 002000 002001 GATGAATGTG GGGGTTTTAT TGAGTGGTGG AGGTGGAACT CAGCAGGATA GATGGGAAAC TGGACAGGGG ATGGAGTGGG 002080 002081 AAGATCATCT TCCCCTGGAG CTTGGCCATC CACTGGCTGA TTCTCTGACC ATCCCCAGCT GAACTCCTCC TAACAGTCCT 002160 002161 TCTCTTCTTT CCTCTGCTGC ATTGTTCTGC CATCCAGTTT GCTAATCTCC TTGTTTCCTG TCTCCTCATC TGCTCCTGGA 002240 002241 GCCTGGGGTT CGGAGTTTAT ACGGGTACAG GACAGGGTGT GTGTCAGGTC AAAAGGCAGC TTTTTGGGCA TGAAAACAGG 002320 002321 AATGCCCGTC CTGTATCCAG GCTAGAGGGT GGGGCTTTTG CTGGGGAACT GCCCTCTTCT ACCCAGTATT TCCCTGTCTC 002400 002401 CTTTCTGCAT CATAAAGATG TGTGGTACCC AGTTGGTGCA GACGCGAAAT TCATCTGTTT CTTTATGTTT TCTCCCTTTG 002480 002481 CTCTAAAAGG GTCCATATTT GCCTGCATTC TAGTGCTCAC CACACCACAT TGGGGTATTT GGTTATGTGT CTGGTTTCTT 002560 002561 CAGTAGCCTA ATGGTGTTCC CTGTGCAAGA TTCTTAGATG GGCCTCAATA AAATGGTTGA GTTGCACTGA ATTGTGTTTC 002640 002641 TAAAGTAGAT ATCATGTCTT ATTTCCACCA GGGCACAATG TCTAGCACTT AGAAGCTTAA AAAAAGATTG TTGAGATACT 002720 002721 AAATGAATAG ATTAACCAAA AGTTTAATTT TTCTAGCAGT GTTCATGGGT GGGAACAAAG CAGTAAAACA AACACATACA 002800 002801 AAAATAAATG GAGGTCAAGG ACCTATAATA CTAAATGAGC TAGCACCATT TCATCTGGCT GTGCTACTTC CTAGCTATGC 002880 002881 AACCTGAGAC AAATCACATA TACTCTCTGA TCTTCTATTT CATTATCTGT GAAGTGGACA CAAAAATAAT ACCTACCTCT 002960 002961 TAGCACTGTT TATAAAACCA AATAAAAGTA AGTAAAGTGC TTAGCAGAGT GTGTAAAACA CAAATTTGTG CTCGGTAAGT 003040 003041 GTTAGTTATT ATCATCTTAT TGTTTCCTGA AAGGCCTCCA GCTATGCTTG TTAAGAAAGG CTTTTATTAA GTGTATTTAA 003120 003121 AGATACTAAT GATTAAAGTA ATGAGAGTCA ACACAGTCAA TATTTATTGA GTGCTTACTT TGAGCCAGTC ATCTATTCTC 003200 003201 ACTGGATTAC ACCATTGCAA |
Predicted Small Protein
Name | NONHSAT057030_smProtein_1640:1819 |
Length | 60 |
Molecular weight | 6567.4063 |
Aromaticity | 0.0508474576271 |
Instability index | 51.7644067797 |
Isoelectric point | 4.95098876953 |
Runs | 9 |
Runs residual | 0.0080858342404 |
Runs probability | 0.0406583053642 |
Amino acid sequence | MGEFPGPPHRMCDRGMALFLAAMSSKPLQEVEHADEQVQEPERELLGSRPTAVSRGEFL |
Secondary structure | LLLLLLLLLLLLHHHHHHHHHHHLLLLHHHHHHHHHHLLLHHHHHHLLLLLLLLLLEEL |
PRMN | - |
PiMo | - |