NONHSAT057070
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT057070 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2434 nt |
Genomic location |
chr18+:5239980..5242413 |
Exon number |
1 |
Exons |
5239980..5242413 |
Genome context |
|
Sequence |
000001 AGCAGCGTTT TTTTTTTTCC TCCATAGTAA AAAACCTACA GGATACCACC ACCAAAGGAA AAAACAAGTT TTTTTCAGTA 000080
000081 AACCTCACAA GAGCATACAT TTGATAGAAT ACACGGATTT TCTAATGAAA GCTCGCCGTC ACCATTTTAT AAGTCAGAAC 000160 000161 ATGAAAGTCA AAATATCTCA TACAGATGTC TTTTTTTTTT GAGAAGGTAC ACAAGGCTTG CTTGTAGAGA TGGAGTTACA 000240 000241 TGGAGGGACA GAAGGTCACT GGTCAGTGAT TTTAGGTTTT TATACTTCTG AAAACAGGTA ATTACAGATT CTGATCAGTT 000320 000321 TATCATTTTC TTTAGTCTTT TATTTTCTGC TGAATGCTCT CAAGGGAACG GATCCATACC TGTTTATCAG GCTCACCTGG 000400 000401 AAGAGCCAAG TCATCCACTC AGGTCTTCCT CTGGACCTGC ATAATTTCCT CATTTACTAG ATTGGGTTTC TTTTATGTGT 000480 000481 GGGCTTTTAA TGCTTGGTAT CTCTGGTCTT CCTAATATGT AATGCTTAGC ATAATAATTT TAGCCATTAT TCATTTTTGT 000560 000561 AGTAGGCTTC ACTAGCTTCC TGCTTCTCAA ATCCCTTGAA AAGATGAGAT TTTTTTTTCG TGGAGTTCAC GTCTAGTAAG 000640 000641 TTGGTCTTGA TTTTTTTTTT CTTTCAGAAC CTTCTGGATT TCAGCTTTGG CAAGCTTCCT CTGTTTCTGA GACACCTCCA 000720 000721 TCACCTGGGT TACAATCCCA TCCATGATTT TCCCCATCTC CAGGCATTTT TCATGGAAAG CTCCTCATGC TTTTTAATTC 000800 000801 CAGTTTATCC ATTTGTGTGG CTTTAACCTC CACATCCAGG TCTTTCTGGC TAAACTGCAG TATATCCACA ATGGGGCCAA 000880 000881 TGGACACATA AGGGAGGCCC TATCACAGGA ACACGAACAC CCGGAGTCGC TAGAAATCAG ATTCCACCGG CTTTGCTTCA 000960 000961 GGCCGACTTC CTAAGGAAGG CATGGTAGCA TCACAGATGC TGTTTGTCTC AGTTTCCTGA GAAGCCAGTT TCTTAGAGCT 001040 001041 GTCATTCAAG AGTGGGTCAA ATTTGAGATA TAAAAACCTT TCTCAAGGTA GACTCTTTGG CCCCTATGCC TAGTATGTCA 001120 001121 GCTGGGCCTC TGAAGCTCTC CTCTTTGAGG TCCTGGCAGG CTCTGGCCCC TGTTGAGAAG GGGAAGCAGT CATGTGAACT 001200 001201 CATGTGCTGG AAGAATCCAC TCTACCCCTT CCCTGGCTTC TCTGCTGCAA TTTTTGTCTT TAAACGTATT TTCAGGTGAT 001280 001281 TCCAGTTTGC ATACATAATT GAGAAATATA AGATTTGGTC CCCAGTAGAG AGCCAGGTGA ACTTAAGAAG GAGTCCATCT 001360 001361 AAGAAAATTG CACAATTATC TAGTTTCACT TGGGTTTAGC TTTTATGGCT TACTTGATTT AGTAATCAAA TGATTTTCAA 001440 001441 ATGATTTTGA TCAGGTGACT CTTCGTAAAC TAGAGAATGA ACTTGAGAGC CGAATTAGCA CAGTTTAAAA ATAATCATTT 001520 001521 AGTTTTTGTT CTCTATTGTG TAAATTATTG AGGTTTGACT GTCTTGGCTA AACTAAGGCT CATCTAATAT CTTTATTTTT 001600 001601 GATATCCTAA TTTCTTGCCA ATTAATTGAA GGTAACATAC TAGCAGACCA GATAACTACT TATGCAAACC TCAGATAACC 001680 001681 ACTAATTTAA ACAAAATTAA ATCCTTTGCC TTCCCCAGAT CCTTTGCACA TGGCCTGCTA TCAACAATCC TCTACAATGA 001760 001761 TTCtcagcat cacctaggga gcttatgtaa aatctcaaat tcctgggccc tatccccaga gtttcttatc aagtaagtct 001840 001841 gcattgggat ctgaggattt gcatctctaa caaaaattcc taggcgatgc tcacactgtt ggtgtaaggg tgagtacaaa 001920 001921 ttagaaataa aactatttaa ttctgcctgg tgcaaaggag agagagagac ttttaccctc cacatccttt tctttggtca 002000 002001 tttactttag gaaacttaat tgtaagcttt ttctgtgcct ctttgaaatg cctgtaaatc tttccaaaaa ctaaattagg 002080 002081 cttttgccaa ttttacaacc taagaatgtg aattcctcaa ggacctggga gctatctcac tgaaatttaa tcattgagaa 002160 002161 aaatagtacc cctatctttc agcttcctgg aaacataaga gcctaacttt attaggcacc ttgctccatt acaaagctat 002240 002241 cttctgtcat aaagatacaa gaaatttatt tttcccttgg acaaaagcaa ctaactagca gagggtcacc aaaattacca 002320 002321 ggtgaattta gggtgaactc tgtgtgacaa atggtgctgc caagttctct tgagtactaT AGAAAGTGCA TGACATGAAT 002400 002401 TTTTTACTTC ATGATGGTGC AAaaccattg cttt |
Predicted Small Protein
Name | NONHSAT057070_smProtein_353:514 |
Length | 54 |
Molecular weight | 6197.0892 |
Aromaticity | 0.207547169811 |
Instability index | 43.7473584906 |
Isoelectric point | 9.83990478516 |
Runs | 8 |
Runs residual | 0.00931891394386 |
Runs probability | 0.0729221868928 |
Amino acid sequence | MLSRERIHTCLSGSPGRAKSSTQVFLWTCIISSFTRLGFFYVWAFNAWYLWSS |
Secondary structure | LLLLLLEEEELLLLLLLLLLLLEEEEEEEEEHHHHHLLLLLHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTToooooo |