NONHSAT057086

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT057086

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2192 nt

Genomic location

chr18+:5747140..5795900

Exon number

10

Exons

5747140..5747224,5748739..5748963,5750778..5750908,5758294..5758320,5760986..5761046,5762296..5762472,5769761..5769865,5779943..5779976,5793585..5793822,5794792..5795900

Genome context

Sequence
000001 TCTCAGACAA CACATGATCT CTACCTGCCA CTTGCCTAAT TCTGTTGACA GAAACTGCTT TCAATATGAC TGTTGAAATT 000080
000081 TAAAGtgtca ttattatgtc acataagatt atgacttcta tcttgctagt agaccctctc cattaactct ctctctttct 000160
000161 gattgagtgt aagctgctat atgaagggat ccacaagacg aataattaag ggggacctct gatcaacagc cagcaaggaa 000240
000241 ctgaatccct cagacccaca actcacaaga aactgaagct gaagcagatt cttcctcagt caagcttcag GAAAGAAATC 000320
000321 ATGAGTGACC ACTCAGCTCA AGGCTTCTCT GCTGATGCCA TCCAGTGAGT TTCCTGGCAG CCATCTTTTT ATGAAAGAAT 000400
000401 AGAGGTCAGC CTGACTGCAC TTCCAGATGA TTAGAGGTGA AATGGCTTTG CATTTTAGCT TAGGGAAGgg acctgctttg 000480
000481 cagaaaggat CTCATTGAGA ATAGCAAAAG GAAGTTGGGA ACCATTACAG GTGCCCAGCT GTATTGGTAG AGGAGACCAA 000560
000561 CCACACCCTC CACAGCACAG CACCTGGAGA GGAACTGCTG CCATGACCAT AGAGGACACC CTCTGGATAC AATGCCAGAC 000640
000641 TTGATGTGGG ACTGACCAAC CTATGGACCC CAGGCACCAC CACCCAGACC TGCTCAGCAC CTGAAAGCAT TCACAGCCGT 000720
000721 GGAGAGAGAA CTGTTCACTG CTACCATCCA CACTTCTGGG CCCCTTCAGC AGCAGGGTGA CAAGGAAGAG GGAAATCGAC 000800
000801 TTGGAAAAGA GGGGGCGAAA AGGAGGCTTA AGGACATAAT TTGGCGGGGA CCTCTGACCC AAGAGTTCGG TCAATGCATA 000880
000881 TGTTGGCAGC CAGCTGCACA TCGCACCAAA TATGAACTTC AAATAGAAGA AAGCCTCATT TGGAAGAAAG CTCATGCACA 000960
000961 GACTGTAAAT ATTTCAGAGC AGATTGTGTC TCTGTAGATT AAGTAAGTTG TGAAAGTCTG AACCTCTGCC AAAATTTTAA 001040
001041 GACCTTGACC TTTACATCTC TGAGTTTCTA TCTgtcattt ttcgcaaaca gtttattttt ccagtatgac aatgttgtga 001120
001121 caagatcaga agccagcttt ctcaccatta aatcaaagtc ttatcaatat atggagactt ttatggaaag aaacctgaaa 001200
001201 ttacgcagaa atgccttccg caagaagtgg ctagtatggt ggcttcaaga acagtgacat ttttcagtat gtccgttgtt 001280
001281 ctaagacgtt agtacatcac aattacctag aaaacttgtt aaaacacaga agtctgggct ccccctcttg gccaaccccc 001360
001361 attcccagag ggtttctgtt tccatgggtc tgaaatacca cctaacgatt ggcatttcta acaaatttct gcatgaagct 001440
001441 gctggtctga ggaccacact ttgacaacca gtgcactaca ttaagctatc tggagaagct gcaaatgcag atgaagaagc 001520
001521 tacaaatttt tctatgtcaa caaaaattga ctgatgaggg tgaccttcgg atcatgtttt taatgtttat gaaactggtc 001600
001601 tcattatcag aagtaaatgg cttcaagaac ttcagcctga ggaagaaaac atgagtccta ggcatatcag gctacaacca 001680
001681 tgtttggaat gaatctaggt gcaaatctca gtggagaatt aactgtacca atattttaat taggattact aatgttttgt 001760
001761 tacttcctga ttacaaggtt ctataggttt tgaatgatcc actgtaatcc tgtttctttt ccataagtcg tgtagttttt 001840
001841 agcatgtaat tatgcagacc ataaggtttt tcaggaatac taatatggca ttagattaga aatgcTATAT TAAAAATTCT 001920
001921 TATTAAATCT ACTGATAGTA ACCAAAAAAT AGAAGATTCA GAAGAACTAG CAAATGTGGA GAGAACGGAT GAAATGGAAG 002000
002001 CAGTGTGAAC CTAGTGAATA CTTGCCAAGC TGTATCTCCC CTGAATTTGT CAAAACATCA TCTCCAGCAT CTGAGCTAGA 002080
002081 CCAACCCTCA GTGCTAACAT TGATGTGATT AAAGAGTCTG AACTGGGAGC AGAATTCCTT CAGGTATTTT GTTAATAAAA 002160
002161 TAAAGCTCTC CATCTCTCCT TAAATTAAAC AA
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Predicted Small Protein

Name NONHSAT057086_smProtein_1973:2107
Length 45
Molecular weight 5146.9128
Aromaticity 0.0909090909091
Instability index 87.8818181818
Isoelectric point 5.10565185547
Runs 7
Runs residual 0.00401069518717
Runs probability 0.0138037196861
Amino acid sequence MWRERMKWKQCEPSEYLPSCISPEFVKTSSPASELDQPSVLTLM
Secondary structure LLHHHHLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLEEEL
PRMN -
PiMo -