NONHSAT057086
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT057086 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2192 nt |
Genomic location |
chr18+:5747140..5795900 |
Exon number |
10 |
Exons |
5747140..5747224,5748739..5748963,5750778..5750908,5758294..5758320,5760986..5761046,5762296..5762472,5769761..5769865,5779943..5779976,5793585..5793822,5794792..5795900 |
Genome context |
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Sequence |
000001 TCTCAGACAA CACATGATCT CTACCTGCCA CTTGCCTAAT TCTGTTGACA GAAACTGCTT TCAATATGAC TGTTGAAATT 000080
000081 TAAAGtgtca ttattatgtc acataagatt atgacttcta tcttgctagt agaccctctc cattaactct ctctctttct 000160 000161 gattgagtgt aagctgctat atgaagggat ccacaagacg aataattaag ggggacctct gatcaacagc cagcaaggaa 000240 000241 ctgaatccct cagacccaca actcacaaga aactgaagct gaagcagatt cttcctcagt caagcttcag GAAAGAAATC 000320 000321 ATGAGTGACC ACTCAGCTCA AGGCTTCTCT GCTGATGCCA TCCAGTGAGT TTCCTGGCAG CCATCTTTTT ATGAAAGAAT 000400 000401 AGAGGTCAGC CTGACTGCAC TTCCAGATGA TTAGAGGTGA AATGGCTTTG CATTTTAGCT TAGGGAAGgg acctgctttg 000480 000481 cagaaaggat CTCATTGAGA ATAGCAAAAG GAAGTTGGGA ACCATTACAG GTGCCCAGCT GTATTGGTAG AGGAGACCAA 000560 000561 CCACACCCTC CACAGCACAG CACCTGGAGA GGAACTGCTG CCATGACCAT AGAGGACACC CTCTGGATAC AATGCCAGAC 000640 000641 TTGATGTGGG ACTGACCAAC CTATGGACCC CAGGCACCAC CACCCAGACC TGCTCAGCAC CTGAAAGCAT TCACAGCCGT 000720 000721 GGAGAGAGAA CTGTTCACTG CTACCATCCA CACTTCTGGG CCCCTTCAGC AGCAGGGTGA CAAGGAAGAG GGAAATCGAC 000800 000801 TTGGAAAAGA GGGGGCGAAA AGGAGGCTTA AGGACATAAT TTGGCGGGGA CCTCTGACCC AAGAGTTCGG TCAATGCATA 000880 000881 TGTTGGCAGC CAGCTGCACA TCGCACCAAA TATGAACTTC AAATAGAAGA AAGCCTCATT TGGAAGAAAG CTCATGCACA 000960 000961 GACTGTAAAT ATTTCAGAGC AGATTGTGTC TCTGTAGATT AAGTAAGTTG TGAAAGTCTG AACCTCTGCC AAAATTTTAA 001040 001041 GACCTTGACC TTTACATCTC TGAGTTTCTA TCTgtcattt ttcgcaaaca gtttattttt ccagtatgac aatgttgtga 001120 001121 caagatcaga agccagcttt ctcaccatta aatcaaagtc ttatcaatat atggagactt ttatggaaag aaacctgaaa 001200 001201 ttacgcagaa atgccttccg caagaagtgg ctagtatggt ggcttcaaga acagtgacat ttttcagtat gtccgttgtt 001280 001281 ctaagacgtt agtacatcac aattacctag aaaacttgtt aaaacacaga agtctgggct ccccctcttg gccaaccccc 001360 001361 attcccagag ggtttctgtt tccatgggtc tgaaatacca cctaacgatt ggcatttcta acaaatttct gcatgaagct 001440 001441 gctggtctga ggaccacact ttgacaacca gtgcactaca ttaagctatc tggagaagct gcaaatgcag atgaagaagc 001520 001521 tacaaatttt tctatgtcaa caaaaattga ctgatgaggg tgaccttcgg atcatgtttt taatgtttat gaaactggtc 001600 001601 tcattatcag aagtaaatgg cttcaagaac ttcagcctga ggaagaaaac atgagtccta ggcatatcag gctacaacca 001680 001681 tgtttggaat gaatctaggt gcaaatctca gtggagaatt aactgtacca atattttaat taggattact aatgttttgt 001760 001761 tacttcctga ttacaaggtt ctataggttt tgaatgatcc actgtaatcc tgtttctttt ccataagtcg tgtagttttt 001840 001841 agcatgtaat tatgcagacc ataaggtttt tcaggaatac taatatggca ttagattaga aatgcTATAT TAAAAATTCT 001920 001921 TATTAAATCT ACTGATAGTA ACCAAAAAAT AGAAGATTCA GAAGAACTAG CAAATGTGGA GAGAACGGAT GAAATGGAAG 002000 002001 CAGTGTGAAC CTAGTGAATA CTTGCCAAGC TGTATCTCCC CTGAATTTGT CAAAACATCA TCTCCAGCAT CTGAGCTAGA 002080 002081 CCAACCCTCA GTGCTAACAT TGATGTGATT AAAGAGTCTG AACTGGGAGC AGAATTCCTT CAGGTATTTT GTTAATAAAA 002160 002161 TAAAGCTCTC CATCTCTCCT TAAATTAAAC AA |
Predicted Small Protein
Name | NONHSAT057086_smProtein_1973:2107 |
Length | 45 |
Molecular weight | 5146.9128 |
Aromaticity | 0.0909090909091 |
Instability index | 87.8818181818 |
Isoelectric point | 5.10565185547 |
Runs | 7 |
Runs residual | 0.00401069518717 |
Runs probability | 0.0138037196861 |
Amino acid sequence | MWRERMKWKQCEPSEYLPSCISPEFVKTSSPASELDQPSVLTLM |
Secondary structure | LLHHHHLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLEEEL |
PRMN | - |
PiMo | - |