NONHSAT057267
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT057267 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2920 nt |
Genomic location |
chr18-:10411605..10414512 |
Exon number |
1 |
Exons |
10411605..10414512 |
Genome context |
|
Sequence |
000001 GGGTGAGTAC CAGCAGAAGC CGCCTGGACA GCAACCGGAA GTGCGGTGGC TCTGGTGGGC GTGGTGGCTG AGTACCAGCA 000080
000081 GAAGCCGCGT GGACAGCAAC CGGAAGTGCC GTGGCTCTGG ACTCTGGGCT GTCGTAGCCA AACACGCCTT CTTGGCCGAG 000160 000161 TGGTGGCATT CTGCCTGCCC CCTGTGGGCA TCATTGAGAT TCTGCTCCCC AGCTTCCGCA GTGCTCCGTT TTGTGATGGA 000240 000241 AAGTCAGCAT CCCTTGCCTT AGGAGAAACC CAGGTATCTG GTGATGGAAG AACTTTTGAG GGAAGCTTGA GACTGGCCAG 000320 000321 TCCACACTCT GCTTAACCAA GGGAAGGGCA CCACTTCTAC CACCAGGAGA TACCTGCTGT GGGACACAGT GCTGCTCCAG 000400 000401 CCATGCAGAA GCTCACACAG GCCTGCAGCA GTTATTCATC CGTGCACAGC TGCCACTGGC CAGCAGAGCC TGTGATGGGG 000480 000481 CCTTCACAGG TAATTCCCAA GATCAAAACA GCCTCTTGTA CTTAAAATAA TTGCTTTGCC ACCATTTCCA AGGTGCTGCA 000560 000561 GAGTGCTTCT GAATTCTGTT CATTTCAAAG AACCCACTTC CTCTATTTGA AAAACGGGTA TTTTAATGTC TGCCAGGCCA 000640 000641 CAATTCCATG AGGCATGATG GTGTGCAGAA TGTTCTGGAG ATTTCCATAA GAAAGATCTC TAAGGGCCAG AACTGACTAA 000720 000721 AGTCATGTAG GCCACCTCTA AAAGAGGCAA GGCTCAAAGA TAAATACTAG CATCAAAAGA GAGGTCCTTT GGTGTGATAT 000800 000801 GCCCCATGTC ATTCAGCTTT GTTGTGGCCA GTCATCGTTG GTGGCAGCTG ACTGGTGGCA GAATCACACC CACTATGTGA 000880 000881 TTCTCTGCAG AAGGCTGGTG ATTTGAGGAT GGACAGGAAG TTCTGAACTC AGGAATACCA TGCATTTTCA CAAGCGTTTT 000960 000961 CACTTTGCCT TAAGATTTGT AGAAGATTTA AGTTGGGATC CCATCATCAG CAAAACCTAA CACCACCATC CTGAGATAAG 001040 001041 CTAAGAAAAG CTAAGAAAAA GATAAGCTGA GAAAAGCTAA GGAAAGATTT GTCAACCTTT CTTCTAGATC AGAACAGCAA 001120 001121 ACGTGATGCA GGATTTCCTG AGGTTGGGAC CGGACCGAAA CGTTTTCCAT CTTCTATTTT TGTTTACTCA GCTTCAACTG 001200 001201 CCACCTTTTA TGCTATCCTG GGGGCAAGGG GGCACCCATG TGAATGAGAG ATACTGGATT TGGCCAAGAT CATTAGGCAA 001280 001281 GGGTGCCGTT CCCACACAGT AATGCCTTGC AGGCACAAGG ATGGAAAATT ATGCCAGGAA TGCGATACCG CCAAGCCTGA 001360 001361 ACACAGAGAG GACACGACGT TGGCACAGGC CTGTTGGGTC TTGACTTCAG CCTGCAGAGG AGCTGGAGGA GGCTGGCAGA 001440 001441 CTCTGCTCAC AAATGGGAAG GCCCAGCTGC CAATGGCTTT TCCTCTCTGC CCATGTAACA CTTTTTGTGG GGAATGTGTG 001520 001521 GACACAGCTT GAGGCTTTGT ATCCACCCTG TCAGTTGGTG AGATAGAGAA GAGATGGGCT GATGGTTATT GAGGCACTAC 001600 001601 TGCTCAGATG GGGCATTGTT GGAGCCCATA GATGGGGCAT TGTTGGAGTT GTAATGAGAG AAGTTGCTAG TGGCCCCTGG 001680 001681 AGCAAGACAC CTGGAGCTTC TATTCAGCTT GCTCTTCTTC AACCTCCATG CTTCTGTAAG ATGAGATTTG CACGGTGCTT 001760 001761 TTATTTATAT ATTTTATTAT TATTATTTTG AGATAAGGTC TTGCTCTGTC ACCCAAGCTA GAGTGCAGTG GCATAACCAT 001840 001841 CGCTCACTGC AGCATTGACC TCCCTGGCCC AAGCAATCCT CCCAACTCAG CCCCCTGAGT AGCTGGGACT ACAGGCACAC 001920 001921 ACCATCATGC CCAGCTAATT TTTAAATTTT TGTAGAGTTG GGATCTCACT CTGCTGCCCA GGCTGGCCTT AAACTCCTGG 002000 002001 ACTGAAGTGA TCCTCTTGCC TCAGCCTCCC AAAGTGCTAG GATTACAGTC ATGAGCCAGC ATGCCCACCC ACATCATCCT 002080 002081 TTTAGAGTGA CAAATTCGGG CTGGCTCGGT GGCTCATGCC TGTAATCCCA GCATTTTGGG AGGCCGAGGC AGGTGGATCA 002160 002161 CCTGAGGTCA GGAGTTCAAG ACCAGCCTGG CCAACATGGT GAAACCCTGT TTCTGATAAA AATACAAAAA TTAGCTGGAT 002240 002241 GTGGTGGTGG GCATCTGTAA TCCCAGCTAC TTGGGAGGCT GAGGCAGGAG AATCACTTGA ACCCAGGAGG CAAAAGTTGC 002320 002321 AGTGAGTCAA GATCGTGCCA CTGTACTCCA ACCTGGGCAA CAGAGGGAGA CTCTGTCTCA AAAGAATAAA AAATAAAAAA 002400 002401 AAGTTAAGAA GGACAAATTC AAATAGGTCT AGGGGAGAGG CAGAAAAGCT GCTTTATGTT AGGACCTGGC TTGTATGAGA 002480 002481 GGGAACAATA ACTGCAAATG TGGAAAACTG GTAGGGAGAA AGGGGATGAG ACTGATTTTG TATCACTCTA AATGGTAACT 002560 002561 ACGCTGACAA ATGGAAATAT CGAAGGAAAG TTTCCACTCA ATAGAAATGA AGTGTTTTCC AATAATTAGA ATGGTGGAAA 002640 002641 AAAAAAAGTG GCTCCAGGTG AGAACACCCA GAGTTCAAAT TCCAGGTTTG TGACTGACCA CCTCTGTGAC CACAGGCACA 002720 002721 TTAGACAATG ACTCTGAGCA TGTTTTCTCA TCTGCAAAAC ACATATGTTT TTGACGATTT CTTATTGATC ACCAACTACA 002800 002801 TGCCATGTTC TAGAGACCAT GTTCCACCCA AGAGTTGGAA AAAAAGGGGT AAATAAGTCC TGCAGTTTGC CTTCTAGGTG 002880 002881 GGAAGAAAGA ATAAAGAATG AAGCGAAAAA AAAAAAAAAA |
Predicted Small Protein
Name | NONHSAT057267_smProtein_1301:1531 |
Length | 77 |
Molecular weight | 8188.3453 |
Aromaticity | 0.0526315789474 |
Instability index | 45.5302631579 |
Isoelectric point | 6.01995849609 |
Runs | 7 |
Runs residual | 0.0493042952208 |
Runs probability | 0.0394806571278 |
Amino acid sequence | MPCRHKDGKLCQECDTAKPEHREDTTLAQACWVLTSACRGAGGGWQTLLTNGKAQLPMAF PLCPCNTFCGECVDTA |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHLLLLLHHHHHLLLLLLLLLLL LLLLLLLLLLEELLLL |
PRMN | - |
PiMo | - |