NONHSAT058101
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT058101 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3724 nt |
Genomic location |
chr18-:11666455..11670186 |
Exon number |
2 |
Exons |
11666455..11670156,11670179..11670186 |
Genome context |
|
Sequence |
000001 AGTTAGAGGG GAGGACAGTA ACCAGGGAAG GTTAGCGCCA GCAGGGCTGC ACGCCACAGG CTGGGGCTGG GGGAGAGGGA 000080
000081 AGGTACAGAG AGCGGCAAAC TGTCGAACTC CTTCCTCTTC ATGCTTCACG GTTCCCCAGC CACGTGTTTG GTGTAAATGA 000160 000161 GGAGGGCCGG AGGGGCCAGC CTGCAGGGTG GGTTCCAGTT GCCCTGAAAG GCAGGGAGCA GGCAGAGATA GAGTGCAGGG 000240 000241 CATGGCATTG GAGGCCCAGT CCACCCTGTT CACCCTCCTC TCCCACATCA GGCTGGCACT CTGCACATTT AGGGTGTGGC 000320 000321 CAAGCCTCAG CCAGCAGAAG CAAGTCTGGT CTTGCTGACC AGCCTGGCCG GCTGGCGGAG AAAAGGAGAA GACGGTGTCT 000400 000401 CTAGGGAGAT CCCGGGCCTG AGCGGCAGCG TCTGTCAAAT GTGTTTGGCT TCTGTCTCTT GAGTAGCCCA TCTGAAATGA 000480 000481 GGAAAGGGCC AAGGGGCCCC GGGGCTCAGG TCCACCACCC ACACTCCCAT TCTCACAGCC CTGCTGGACC AAGGCATCTC 000560 000561 TCAAGTGGGC CGCACTGGCC GTTTTTCTTG GTTGCTTGCC TGACTCCAAT CTACTCTCCA CAAAGCAGTT AGAATTAGAA 000640 000641 AACAGACGAA AGCCATGTCT GCCGCCAGCC CTGCTGTGCT GCCTGTGGCC AGCCACCCGC CCCAGACCCC ACAGCCATGG 000720 000721 CTGGTCACCT GCCTTAGGCT CCACAGCCCT GCTGGCTGGT CACCTGCCTC AGAACCCACA GTCAGTTCCT GCCTCCTGCA 000800 000801 GATGTCGTCT AGGGCTCAGC AAAAAGACCT CTCATTTTCC TATCTCACAG TGCCTCCCTG CCACGCTCTG GCTCTGTATC 000880 000881 CTCTTAATTT ATTTCTAGTC CTTATCATAA AGTATGAGCC TTTGTCTGTT CACAATCTGT TAGAGGCTCT GTGTTTTTCA 000960 000961 TCCACACTTA GCGTACATGT GTTGCAGAAG GTGCAAATTA GTCTTGTAGA AGAAAATAAA ATCTTGGGAC CCCGAAACTC 001040 001041 AGTATGCCAA AGGGAAAGTT AAGCTTGTGA AGTGAGTCAC ACAATACCAC CTTTCTTTTG TTCCCAGACA GACAGCTACA 001120 001121 ACTTCACGAC CCTGTGTCAT AGCCTCATCC ATCAGCCAGG TTCTCACATG GCCTCTGTCA CGAATTGCTC ACAAGGAAGT 001200 001201 GTAGCCATTT GTCTTAGTGC CTCCACTCCC TCCCTCCCTT CCTTCCTGCT GTTTTTTTTT CCCCTTTAAA TACTGAGTCT 001280 001281 CCACAACCTT CTTTGGAAAG CTCGGATTAC AGATACTCCT CTAACTCATG TTTTTCCTGG GCATATCACC AAACTCTGGT 001360 001361 TAAATAAACC TCTATCGATT GAGACTCCTG CCTCAGTCAC ATTTGGTTAG CAGACTCTGG CTTAAAAGTT TTGGCGACTT 001440 001441 TGACTTTTAT ATGCTGAAAC TACAGTGGCC AGTCAGATTT TGGGGGCTCC TGGCATTTCT GGCTCTTTAG CCTAATCTTT 001520 001521 TCCATACTGA CAGCTCTCTC TCTCTCTCTC TCTCTCTCAG ACCCCGCTGA CAAACTTGTT GCTACCAAAC ACAGCACTCT 001600 001601 AGTTTCTCTT TCTCTAAATT ATTTTCAGGA TTCATTTCGC CACTGAACTT TATTTTTACT GAATCACATG TCTTTTGTCG 001680 001681 ACAACTGATG TCTACCGAAG GCACAGGTGC TCCCTGGTTC AGGCATGGAT GTCTAATATC TCATGGACCC TGATGTTGTG 001760 001761 CTCCACATTG GTTTCTGATT TTGTTCTGTC ACTCCCCAAA GTGTGTTTGC TGAGATGCAG TAACCCATTC AACAAAATAT 001840 001841 TCTTTGCAAC AGGAATTGTT GCATTTTCTT ATAAATGTTT AGGTTTGGTG CTGGCCCTCG CACCCAAAGA CCATCAAGGG 001920 001921 AAGGTGAAAG AGCCACGGTT CCTGAGCCAC AGGCCCTGAG CTGGTATTTA GCTCTCTGTT TGCACAGCTT TGATGACAGT 002000 002001 GGCTTAGACA GGCCACCTCA CTATCTTGAC TGGCAAAACA GGAGCAGGGG GAGCCCAGCA CTGTCTTCTC TCTTGGAGGG 002080 002081 TTTTGCAGGG ATCAAATGAG ATAATGTCTG GGACAGTACT TTTGTAAAAG GCAAATAGTT AACACTAAGA CAGGTCCAGT 002160 002161 CTTTTATAAT TTAAAGTAGT GTGTAAATGG TATGTCCTCA GACGTTTGCC TGAGTGAACA AATCTAAGTG TTTTCTTTTG 002240 002241 CGCACTTAAT AAAGCTCACC TTTATGTCAG TCGTGATATA ACTGCCTATT TTTTTTCTGC CAGGGTATGT TACAACATCA 002320 002321 CACTTCCAAG CAAGGCCCAG GCTGGCCCAG ATGGGACACG AAGCCCCCAG TAAAGATCAG GAGCACTTCT GGGGGTCCCA 002400 002401 CCTGAGGGAT CTGGTGCATA AAGTCAGGCT TGGTTGTAGG CCCCCAACAA GACATAAAAC CTGTACAGGT CAAGAAGTGA 002480 002481 CGCATCTCTG GCCTGTGAGC CCCTCACGTG CTGGGTGGCA CTGAGGTGAT GATGACACTA TTTCTAAAAG ACAGACATAA 002560 002561 TGCCAGTGAC TTCAGTCATT TTCCTCATTT TATGTGGCTA TTTTTAAAAG CTGTCCTCCA GAAACAAAAG AATCCCTGAG 002640 002641 ATAAAATTTC CCAAAGCAAA ATGCTCCACC TGACTGGGGT CCGACCTAGG GGTGGGAGAG CTGGATAGTC CTGGGACACA 002720 002721 GAGTTAGGTC TGTGCTGTTA AAGGCAGAAT TAATATTCCT TGTACTGAAC TGAAAAGGAC AGATTTAAAA ATCGTATCTT 002800 002801 TTGTACTTCC ATCTAAGCTA CTTTAGGGAG TTTTCTGGCT ATGAAGCACC TGAATCTTGA GCTGTAATTC AGAAATAAAG 002880 002881 CGTATCTGCC CTTCTGTCCA CCTTTCTTTC CATCCTTCTG GAAAAAAGCA AAAGGAAAAT TCTTAACTTA CTAAAGAGAG 002960 002961 CATTAATGCA AACGTGAGTC TGAATGACAA TCAGATCAAT AGCCAATTTC AGAAAAAGCC TTCAGCATTT CTCTAAAGAG 003040 003041 AGGCAGAGGC AAGGCACGGT GGTGCTGTGA CTGCTTTGGT GGATAGGTGC TGGCACTATT TTCACTCCAG GAAAGCTGTG 003120 003121 CCTCCCCTTT GGGTGGGGAC GCATGAGGGG CCCTTGTGCT AAGCCACAAA ATATGCCAGC CCCTCGCAGG CAGACCCCAG 003200 003201 GCAGCACAGA TGTGGGATTT GTTTCCCACA GCATTTTAAG ACAGTTTGAA TTGGTTAGAG GCATTTTAAA ATGGGAAACT 003280 003281 TTCATACAAA AAAATTGTTT CTGGCTTCTC TGGAAAAGAC TAGAAGGCCT TGGGCGTGTG TGTCCCTGTG GTGAGAAGAG 003360 003361 GCTGGTTCTG AGGAACGGGC CCCAGAGTGC CCTGAGGCCG TGTCCTCTTT TCCTTAGAGA GGCTGACGGT GACAGCTTGG 003440 003441 GCCATTTTAT GTCTCCTGCC TGGTCCCTGT CGTTATTTGA ATTTGTGACC CTTGCTGCTG AGATCCTCCC CAAGAGAAGG 003520 003521 GTGGATGCAA CGAGGTTATT GCAGATTTTA AAAGTTGAAC TTTCTCGGTG GAGAGCCCAG ACAACACCCT TGGTAGCTGG 003600 003601 GAAGCCACAT GCTGGATGAG CTACAAGGGG CTCAAAACCT AGACTTTATA AAACTGACTT TTCTTTGTCA CTTTTCGGTG 003680 003681 TTTAATCAGA TGATTAAAGT CCTTGAAACA AAAAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT058101_smProtein_1874:2098 |
Length | 75 |
Molecular weight | 8302.214 |
Aromaticity | 0.108108108108 |
Instability index | 56.8648648649 |
Isoelectric point | 7.97991943359 |
Runs | 7 |
Runs residual | 0.0480553724456 |
Runs probability | 0.0446160446161 |
Amino acid sequence | MFRFGAGPRTQRPSREGERATVPEPQALSWYLALCLHSFDDSGLDRPPHYLDWQNRSRGS PALSSLLEGFAGIK |
Secondary structure | LEELLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL HHHHHHHHHLLLLL |
PRMN | - |
PiMo | - |