NONHSAT058426
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT058426 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
3824 nt |
Genomic location |
chr18+:13327065..13329979 |
Exon number |
1 |
Exons |
13327065..13329979 |
Genome context |
|
Sequence |
000001 TGCTTTCCTA GAAGTCAGTG TCTTGTCCTG GGCTGTTGCT TTTCTGCTTG ACTCCCTCTG TGGGCCGTGG ACTCTGCGGC 000080
000081 AGAGTCCTAT CTGCAGGGCT TCTGCATGGT TATCCATTGT CTTCTGAAGA AATGATGATG TTAGTGATGG AGCCACTTTG 000160 000161 GTTAGCGTTT TGTTAAGTAT GAACTTGTGA ATCCTTCCCA CAGCTGTGCA ATATTATTAC CTCCAGGGCA CAGCATCTGG 000240 000241 ACTTTAATTG ATGATGAGTG TATGTGGCCC CAAGGGACAT GGGGCCTCGA AATTAAGGAA GGAGCTGGAA GTAGTGGACA 000320 000321 AGCAGCAGCA CCACCACGTG GAAAGGTGAA AAGTTGGATA AGGACTGGCT GAGAAAATGC CATCAGAATA GCAAGAGGGG 000400 000401 GTCATTGTTG AAGAGCACAG CTTCAGGCAA GTCTTTGAAA TCAAAGCCAG ATTTCAAGGA AGTCGGAAGG AGCAGATGGA 000480 000481 GAGGAAGTGG AGAGATTTCC ATATGGTGCG TGTATTTTTT TTTTTAATTA AGGATTTTGG TGTTAAATGG AAGTGGTACT 000560 000561 TGATGGCCTA GCAGGATGAA ACAAAGTTTG TTTCTAAAGA TAGAGGGACA TGGGCTCACT TTTAAAGAGA AAGAAAGTAG 000640 000641 GTGGCCATTG AGTTATGAGA GGTTGAGAAG CCGGAGATGG TGGGCCCAGA GACCCACAGA GCAGGCTCTT TGAGAGCAGC 000720 000721 AGGTCTTCCT GCTCAGGGCC TTGCTGGTGC TGTCACGAGC CATATCCCCT GGCCTCCTGC TTTGCTTCTG GGCTGTCATC 000800 000801 AATCTGTTTT GTGGTGTTCT CTGAGAAATG AAATTAAATC CTAAGCTCCC AGCCAAATGA ATGGACCCCC TCTTGGCCAA 000880 000881 GGGGCACCCA AAGAAACCTT AGAACTGAGT CCTGGCTGTG ACAGGAGGGG AAACACGCCT CATGAGACCC CCACCTCGCT 000960 000961 GACCACCATC AGGCTCTCCT CCCTGCGGGC TAGAAGCTCC ATACTCATTT CAGCAACGGC CTGATGCTGT CCCTCCCTTT 001040 001041 TGTGGTTTTG ACCAAACAAC TAACCAGCAT TCTCTTCCTG ATACAAAGCC GCTGACCTTG GAGTGGTTCT GGTGAGTCTA 001120 001121 CAGAGGAGGC TCAGTGAGGG TTCTTGTGTC CTCTGCTTCA CCTTTTGATG TCACATGGCT AAAAACTCCA TCCTTGGATC 001200 001201 ATGCTCATGC CACCATTTTT TAAACATGGG TCCCACAGAC AGAGAGGCAT GAAGCTCAGT GTGCATGTGC CTGTTTCTCC 001280 001281 TTTCATAAAT ATTCATGACT CCTCCTAGAG CTCATTGAAT ATGCATATTT GGCAGCCCCA TTCAGCATAA ATCCCTGTCT 001360 001361 TATTCTTCCC ACCCTTGAAG TGCCTGTTTC TGGCTTCTGG CCGGAGGCTA CACTTCCCAG CCTGTCAGAA GAGCCACCTG 001440 001441 CAGGCTGCAG CCCTTTCTGA GAAATAATGC CCTCCTTTCC AAATGCATGA ACCTCATCAT TCTTCAGCTG ATATGTCCTT 001520 001521 ATCCCATGTA GAAGGAAGGA TCTTAGTGTT TATTGAGCGT CAACTTTGTA TAAGGCTCTG GGCTATCTTA TATGATTGTC 001600 001601 ACAATAATTT TAGAATATAT TAATGTGTTC ATTTATACCT TTAATTTTTA AAATTTGCGT TTTTAGTCAA GCAGCTCAAA 001680 001681 AAACATATAA AAAGATGTTT ATTGAAAAGT TTCCCTCCTA TGCCTATTCT CCATCCATCC AGTTCTCCCA CTTCCCAATA 001760 001761 TTTAGTTGTT TTTATTATTT TCTTGTGGAC ACATTCCAAA ATTTTAAGCA TATAAAATAA ACATAAAAAT ATTATTTATC 001840 001841 TTTTATGTAT AAGTTGTGGA GTCTATATAC ACTGTTTTAC ACCTTGCTTT GTTTCACTTA AAGTTTACCT TGGAAATCCT 001920 001921 CACATATCAG TTCACAGAGA GCAGCCTCAT TCTGTTTTAC AGTTGCATAG TTTTGACTGG ATTGAATGGA TACACCAGAT 002000 002001 TTTTTAACCC TGTGTTGTAT AAATAGATGT TTGAGTAGTT TGCAGTCATT ATATATTATG TACACATATT TTCCCACATG 002080 002081 TGAAAATGCA TTTGTAGGAT ACATTCCCAG AAGTGAAGTT GCTGGGTTAA GGGTATATTT ATTTGCAGTT TTGAGTGATT 002160 002161 ATTACTGAGG CCCATCTTTA GGCTTGCACC AGTTCACACA ATCATCAGCA ACATACTAGA GGCCTGTTTC TCTGCATCTT 002240 002241 TGCCAACAGA GCATGTTATC AGTTTTTTAA AGGTTTCTGT CAGCCTACTA GGAAAAAAAG TAATAGAGTT ATTTTAATTT 002320 002321 GCATTTATTT TTATTATGAG TGAGGTTGTC TTTCCACAGG TTTATGAGCT GTTTGTATTT CATTTTCTTT TACTGTCTGG 002400 002401 TCTTATTCCT TTCCTCTTTT CTGGCCAGAT CATTGGTCAT CTTGTAGATG ATGTGGTCAA ATCTATCAGT CTTTCCTTTT 002480 002481 GTGACTTCTG CATTTACAGT TACAGTTAGG GAGCATCTTT CAAAATTATA AAGGAATTCT TCCAGGTATT CTATTACTTT 002560 002561 TAGAAAGTCA TTTTTTTCAA ACAAGACAAA ATACCCAAAT CGTTTATCTT TGAAATTTAT CCTGCTGTGG TATGAGTTAC 002640 002641 GGATCCAATT TTCTCCCCTA AATGTTACCA ATTCCAATAT CATTTATTGC CTAATCTGTC TTTTACTCAC TGATTTGAAA 002720 002721 TGCTGCCTTT ACCATACACT GAATTTCTGT TTGCATTTGG GTCTAGTTTT AGATTCATTA TTCTGATTAA TTGGCCTGAC 002800 002801 TTCTTGTTAT TTTAACCATT ATTCTTTTAA TTAGTCTATT AATTTTTGAG GCTTTCTACA TGTATCCTTA TCTGATGTAA 002880 002881 CTTCCACTCC CTCCAATTTT TTTTTTTTTT GAGACTCCAT CTTGGGGGGA AAAAAGTATA TATATATACA CACACACAGA 002960 002961 CACACACACA CACACATATA TCTCTAAATG TGTGTATAGA ACCTTTTATC AGTATAACAT TGATTTATAA TTAAATGTGG 003040 003041 GTGAGGAAGA ATGTGTGGAG TGTTTCAGAA ATTTTGATCT TAAAAGCCTT TTCAGAAACT CAAAGCTTTC AGAAATTAAT 003120 003121 AGTTATATTA ATAGCCTTCT AAACAGCATT AAGTTTTCAA TTTTAATATA TCTATATAAA ATATAGTGTC AAAGAAAGTA 003200 003201 ACATCAATAT AGTGGGTCTG TAATGGAAAT CTGTCAATGA ACATGAACTG AGTTCTTCAA CTACAGGTTG AAGGATAATT 003280 003281 AAACTTTTCA TTAGGAGTGT TCAGCTACAT GGATTCATGG AATGGTGGTT CATAGTAAGT GATGGTAATC TTTTTATTCA 003360 003361 TGGGTGTAAA CCCTTTATAA CTTAGTGCTT AAAATATTAA TCTTTTGATT ATATAATGTC CCATGAATTA TAGTTTACCA 003440 003441 ATAGTTCTAA AACATGCTAA CCTGACCTTT TCCTTCTAAT TTGTTTTTAA CTTCATTCGA GATAGTACCT CTCACTCACA 003520 003521 GATATTTATT TGGTTATCAA GTGAAGATAG GTGTGTCTAA AAGTGATCTT CTGAATCCTG TCTCCCTAGA GGTACTAGTA 003600 003601 ACTAGAGTTT ACCCAGAAAA TTTTATGATT GTAACAAAAG GAAGTAGTGA CTTATGAAGG TTTTGTTTCT TGAATTTTAC 003680 003681 TTTTGCTACT TGTCCAATAG TGGCTAGTTT ATGTTTATCA ATATAGTTAT TCACTGTGCC TTAAGTTTAT ACTTTGTTTA 003760 003761 TGCAAACTAT AAAATTTCCC ATAAATGTAA AAAAAAAAAA AAAAAAAAAT TAAAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT058426_smProtein_1622:1819 |
Length | 66 |
Molecular weight | 7844.2169 |
Aromaticity | 0.261538461538 |
Instability index | 48.8955384615 |
Isoelectric point | 9.30218505859 |
Runs | 12 |
Runs residual | 0.0343269230769 |
Runs probability | 0.0424394983219 |
Amino acid sequence | MCSFIPLIFKICVFSQAAQKTYKKMFIEKFPSYAYSPSIQFSHFPIFSCFYYFLVDTFQN FKHIK |
Secondary structure | LLLLLLLEEEEEELLHHHHHHHHHHHHHHLLLLLLLLLLEEEELLEELEEEEEHHHHHHH HHHLL |
PRMN | HHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLL LLLLL |
PiMo | TTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooo ooooo |