NONHSAT058473
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT058473 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2415 nt |
Genomic location |
chr18+:14071167..14073703 |
Exon number |
2 |
Exons |
14071167..14073254,14073377..14073703 |
Genome context |
|
Sequence |
000001 AAATAATTGG TGATCCACAA AAAGAAAATA AAGTGAGAGA CAAATTCCTG ACTCTTTTAA TGTCATACTG GTTAAATATT 000080
000081 CGGGGGGAAA ATTTTTATTA AAAATATGTG TACAAAATAC TTTCTAAAAC AGGCATAATT CATCACAATT AATTACAGAG 000160 000161 GGTTGTTCAA ACAAATGGAT CTACTTCTAT AGATATACAT GCATATACAG ACATAGATAT AGATAAATAT CAACTTTCCT 000240 000241 TTTAGCATGA AAAGACAAGA AATTTAAACA ATAGTGAACT AATAAAAATA TACCTCCGTT AAACTGCTCA GACTCAAGAA 000320 000321 AATTAGGGTG AATAATCATA CATCACAGAT GATGAAAGAA GTACTGTGTT CTCATACCTT GCATATTACG ATTATAAAGT 000400 000401 GTTCCACATT TAGGGGTTGG CAACCAAACA ATATCTATTA ACAACTAAAA TATAGAAAAG CAAAATGCAG CAATGCTGGT 000480 000481 CCTGAGAATC TCCCCAGAGT AATAAACGCA GGTATAATTA CAAGAGCAAA ATGCAGGACA CCAATACTTC TATGATATGA 000560 000561 CCTGTATTTG GTGTTGGGCT TTACAGGAGC TCTTTCTCAG ACACATATGC ATTATCTGTA TCTTTTCTGA GATTCTACTA 000640 000641 ACTTTATGGT GAAATCAACA ATAAAAGGTT TTCATTTTGA TAAATTGGTT TTCAAAAGAG AAAGATGTTA CAAGACCCTT 000720 000721 TCAACTTGTC TTGCAAGTGA AGGCTATATC TGAGGCTGCC AAGAAAAGTT ATTGACAAAG GCATGGCAAA ATGTTAATGT 000800 000801 GGTTTTGTTG ACCACTGTGT TTGCAGCACA GTGGAGAAAC AGCGTGGTTT TCTGTCCTTG CTGAGTTTTA TGCATTTTAA 000880 000881 GGAATCATAT TTGTTCATTC CACATTGCAG AATGTTTCTT GCATTTTCAT TTCCTAATGC AGACTAAATA TCTTATGTGG 000960 000961 TTTGCAATAA TTCTCTCCTT TTAAAGGTAT TTCTGGAGTA ACTGCCTGGT CTGTAACATG TTTGATGGAT ACCTAACCCT 001040 001041 TAAATATTAC AAAATTTTAT GCACAATCAC TACTTGATTT TGATGGACAT AAAAACACGT TTTTAAGTTA CAGTAGCAAG 001120 001121 ATATTATCGT TGCCTGTGTT AACTCATTAC TGATACTCGG TTTATAATCA TAGCCACCCT TTGTGAAAAG GTTAGCTTGT 001200 001201 TACATTATGG TTATGCTGAG GGAAGAACAG GCTATCCTGG ATGCTTGAGG GCCTCTCGTG GTGACTGAGT GTTGGCACTA 001280 001281 GTGTCAGTTC ATATCTAAAT ATTCCTACAT ATGTAATGTA CTTTCATATT TTTTTTGACA ACACTTGTCT AGGGAATATT 001360 001361 TCAACTCTAC TCTGTGCTTT TGGGATTCAA TGGGAATCCC CTTTCAGATG GTCAACAGTG TGAGCCTTAT TGATTGACCT 001440 001441 TTTTGCCCTC TTCCCTGAAA TATATTCTCT AGGTTTAATC TGTGGAATTA GATTTTAAGT CACATTTTCT TGCGTAAATG 001520 001521 TATGAAAGCA GGAAAACCGG CTGTTGCTCA TATTAACAGC ATTTTTTTCA CATAGTGTAA GAAAAACAGT GGTCTtattc 001600 001601 accagaccaa tcttgtattc ccgctggtct cacagttcaa gactcccttc cccaggcttt ttgttctgag gtctggccat 001680 001681 acaagcatcc tagctgagtg ggtggaaacg acatttacct ggtacaggcc tgacctgtga aaacACCCTC TGTGAAGCCC 001760 001761 CAAATATTTT TTGCCATACA ACTGCATGAA ATTTTCCCAA GCACCATAGC CAGATTTGAA GACACAGGTT AGCAATGAGA 001840 001841 AATACACCAA TAGAAGGTAT GGGGGTCCCT AAATCCATAT TTGGAGGAAA ATCCACAAGC AGAGTCACAT GACATTTGAA 001920 001921 AGCCTGTGTT GAGGTGGTAT ATGCCAGCAA TGATAAATAT TACATGATGA TCAAACTGCT GATAAATTCA GGTTTGTCTA 002000 002001 TTACAACAGC TAATTTTACG TTAACTGTAA CAAAAATATA TTGAAGAAAA GTTTGCATGG AAATTtttat ttttatattt 002080 002081 atttatttct cctatctcag cctctcaagt agctgggact acaggcactt gccatcacgc ccagctaatg tttgcatttt 002160 002161 tagtagaggc aaggtttcac catattggtc aggctggtct tgaacttctg acctcaggtg atctgcctgc cttggcctcc 002240 002241 caaagtgctg ggattatagg tgtgagccac tgcacctggc cTGGACAATT TTTATTCAAA TTCTGTGTAC AACAAACATT 002320 002321 TCCTGAGTAT TTCAAAAGGC GAAGGAAAAT ATAAACCATA CAGTTATTCA TATAAGAAAC CTGTATCATG ATCTTCACTC 002400 002401 TGTTTTTGAA ATTCA |
Predicted Small Protein
Name | NONHSAT058473_smProtein_2147:2353 |
Length | 69 |
Molecular weight | 7699.8919 |
Aromaticity | 0.147058823529 |
Instability index | 56.3985294118 |
Isoelectric point | 9.30035400391 |
Runs | 11 |
Runs residual | 0.0212639109698 |
Runs probability | 0.046337781632 |
Amino acid sequence | MFAFLVEARFHHIGQAGLELLTSGDLPALASQSAGIIGVSHCTWPGQFLFKFCVQQTFPE YFKRRRKI |
Secondary structure | LHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHLLLLEEEEELLLLLHHHHHHHHHHHLLHH HHHHHHLL |
PRMN | - |
PiMo | - |