NONHSAT058479
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT058479 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1111 nt |
Genomic location |
chr18-:14082166..14132427 |
Exon number |
4 |
Exons |
14082166..14082906,14084331..14084346,14084876..14085075,14132274..14132427 |
Genome context |
|
Sequence |
000001 CTTCAGCCAG AGCGCGGGGT TAGGGCTTCA TTGCCTTGTG TCCTCTGCTC CGGGAGACTT CGGTGATTCT GCCACTCACT 000080
000081 CCGTCGCTCT GTGACCTGCT GGCATTGAAT GATTTATAGC TAAGACTCCA GGACACCCCT GAAGCCGAGA AATGTGGAAA 000160 000161 AGCGAGATTG TCTTTGACCA TTTGCTATGG ACATTGTCAG GGATGGTGCA GCCTGAATGA GAATGTCTGC GGTATTTCCC 000240 000241 GAAATAAGTA TCCCTCAAGG ATGATACTGT GGACCTCACT CAGGAAGAAT GTGTCCTTCA GGGAAAGCTG CACAGAGACG 000320 000321 TGATGCTGGA GAAGCAGTCA TCTGGTTACT TTAGGTTTGT GCCCCAGGAA ttcatagtcc tgggcaacat agtgtgaccc 000400 000401 tgtctctaca gaatttttaa aaattagcca ggcttggtgg tatgtgccta tagtcccagc tacttgagta gctgatagag 000480 000481 gaggatggct tgagcccagg aggttgaggc tggaggttga ggtggttgaa gcttcagtga gctaattatc gtgcctctgc 000560 000561 actccagcct gagtgatgga gagaaaaaaa aaaaaaaGAG GTCAAAGCCA AATTCTGGTA CTATCaattt ttattaaata 000640 000641 ttattttatt ttaaaCATTA CCATATATAT ATTTGTTTTG TGGTAAAACT CCTAATAATG ACACAGTTTG AGACTTGAGA 000720 000721 GAAAGGAGCA AAGCAGTCTT TCTTATCATG TCTGCCACTG CCTCAACCAG GAACCACTGT TGTCAGTTCT GTGGCAAGAG 000800 000801 TCAGGGAAAC TCTCGTAAAA ATCCATTTAC ACATAATTAT GTGAGTTGAA AAAATAGTTC GGTGAATCTA TTGTTATGTA 000880 000881 GTATTCTTTT TTAAAACTAT ATATCTTGAA TCTGTTTTCA TGTTAGCAAA TATTGAAATA CTTGCTTTCT TAGTTCTGTT 000960 000961 TGCAAACATT TCATGCTTAA TAAGAATTTA TATTATGCTG TTCAGCATGC TTATTATTAA ATATTTTATT CTGAGATATA 001040 001041 ATGCTATGAT TATTTCTGAT TTTTAATCTT TTGATTTAAC TAATAAACTA AAGTGGTGTT CTAATTATGA A |
Predicted Small Protein
Name | NONHSAT058479_smProtein_575:685 |
Length | 37 |
Molecular weight | 4494.4755 |
Aromaticity | 0.194444444444 |
Instability index | 64.5277777778 |
Isoelectric point | 10.2145385742 |
Runs | 7 |
Runs residual | 0.013986013986 |
Runs probability | 0.0343705049587 |
Amino acid sequence | MERKKKKRGQSQILVLSIFIKYYFILNITIYIFVLW |
Secondary structure | LHHHHHHLLLHHHHHHHHHHHHHHHHHLEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTo |