NONHSAT058660
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT058660 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2350 nt |
Genomic location |
chr18-:20875977..20911223 |
Exon number |
3 |
Exons |
20875977..20878031,20889644..20889708,20910994..20911223 |
Genome context |
|
Sequence |
000001 AGAAGGTGAG CTCAGACTTC CCGGTAGCAT TGCAGAAGCG TTTCTTCCTT TGGTCCTGCC CCACACGGGC GCGCTTTTCC 000080
000081 TTCAGGGGCT GTGACTAATT ATGGAAAACG GCACACCTGC CACTCTCTCA GACCATGAGG TTTAACTGAG TGAACACCGC 000160 000161 TGTTCCGGGG ctctgcctct cgctgaacgc tcctgctggg ctggggcctc ccgagtagct ggaagtacag ATAATCACAG 000240 000241 CTGGCTTATC AATATTGCTG TTTGATGCGA TCCTGACCAG TGCAACCACG GGATGCCTCC TGCTCGGTGC GCTTGGAGAG 000320 000321 GCCTTGCTGG TTTTCTCAGA GCGGAAGAGC TCCTGAACAA GACGGTCAAG AGAAAGACTC ACAGGCTGCT GCGGGAGAAC 000400 000401 AGCTTGTACA CCTGTGTACG AGCCCCTGGT CTCATAGCTC CCTGTTGGAT GTGTCAGAAA GAGGAATGCA AGGACAGTGA 000480 000481 GGCCAGGTGG GCAGTGCCAT CACCCTCACC CAAGTGAATG TGGTGGTGGC TGATGAGGCC GAGGCCCTGG TGCTTCAAGG 000560 000561 AGCACCCTTT CTGGGGGTCT GCAGGTCACT GCAGAGGAGC GGTCTGTTAC ATCTTCCCAT TTGGAGAACC TCTCTCAACC 000640 000641 GTGCTGTAGC TGGTTCTGCA GAAACAGGAA GTACAGGATT TCATGGGCTG GCTCTGCTCG CCTCGACTGA GCTTCACACC 000720 000721 TCTGGATGCC ACATGCTCTC TCCCAAACAC TGCTTTCAGT GCAAGGTAGT GGGCCTAAGG GGTTTGGTTG TCtttttttt 000800 000801 ttttcatttt taaaatttta aatttttatt tattattatt ttttagagac aaggcctcac tctatcgcct aggctgaagc 000880 000881 acagtggtgc gatcacagct cgctacagcc ttgacctcct aggatcaagc catcctcctg cctcagcatc cacagtagct 000960 000961 gatgtgcacc accagacccg tctcattttt tctattttta ttattttaga gatggggatc tcactgtgtt ggccaggctg 001040 001041 gtctcaaact cctgggctca agcaatcctc ccaccttggc ctcaaagtat tgagattaca ggcatgagcc actgcacccg 001120 001121 gccTTTCTCA TTtttatttt taaattgaca gacgtaacag tgcgcattta tcacgcacaa cacaatgctt tgggaatggt 001200 001201 taaatctagc tcacaaatgc attacctcac acggttgtca tttttgtggt gagGCTTGGT TGTATGTTTT GTTTCATTCA 001280 001281 TGTTTTTACA TCCTTGGAGT CTCCTCTGGG TCCGTCCTTT CTTTGCTGTC ATGCTGGCTT GCCTAAGGCC CACCGCCACC 001360 001361 TGCGTACGAG CATTTTAAAC TCTAGAGTGA GTGACAGCCT TTTTATGGTT GGTGTTACTA TTTATTTCCT GCCTCTAAAC 001440 001441 TTCTCGTGGT CCTTATAAAC TTGTCAGGAT GTGTGTTGCG TTGAATTCTG CATGTCCTTT TTTTGCCCAC CCTCAGGTTA 001520 001521 AGCTGGTACT AACTTATCCC CAGAGGAAAC AGGGTTTATG AGCACTGACA GATGTCTTCC CTGGGCAAAA AAAAAAAAAA 001600 001601 TAGTATATGT ATACACACAC ACATACACAT TTATATTTAT ATTTCTTAAA GCTTTTAATC CCTTTCATTC CCTGATATCT 001680 001681 CAGAGATTTC AAATCATTGA ACACTGAAGT ATATTTTTCA GGCCAGATGA AAAATTGTAT TAAAACCCTA TTCCTggtca 001760 001761 ggcgcagtgg ctcacgccta taatcccagc actttgggag gccgaagtaa gcagatcacc tgaggtcggg agttcaagac 001840 001841 aaacctggcc aacatggtga aaccctgtct ctactaaaac tacaaaaaaa ttagcctgat gtggtgttgt gtgcctgtag 001920 001921 tcccagctac ttaggaggct gaggtaggag aattgcttga acctgggagg cggaggttgc agtgagccaa aattacgcca 002000 002001 ctgcactcca gcctgggcaa cagagcgaga cagtctcaaa aacaacaaca acaacaaaaa CCCTATTCCT TGCCTTTGTA 002080 002081 GGAGTCAAAA TAAATGAACT TCTTTTTtct tttttttatt attatacttt aagttctggg gtacacgtgc agaatgtgca 002160 002161 ggtttgttac ataggtatgc acgtgccatg gtggtttgct gcacccatca acctgtcacc tacattaggt atttccccta 002240 002241 atgttatccc tcccctagcc ctccatcccc tgacaggccc tggtgtgtga tgttcccctc cctatgtcca tgtgttctca 002320 002321 ttgctcCAAA ATAAATGAAT TTACACAAAA |
Predicted Small Protein
Name | NONHSAT058660_smProtein_1184:1345 |
Length | 54 |
Molecular weight | 6034.0614 |
Aromaticity | 0.169811320755 |
Instability index | 52.2983018868 |
Isoelectric point | 6.36175537109 |
Runs | 9 |
Runs residual | 0.00954901058444 |
Runs probability | 0.0328465720623 |
Amino acid sequence | MLWEWLNLAHKCITSHGCHFCGEAWLYVLFHSCFYILGVSSGSVLSLLSCWLA |
Secondary structure | LHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHLEEEEEELLHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTToooooooo |