NONHSAT058976
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT058976 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2743 nt |
Genomic location |
chr18-:34357586..34361938 |
Exon number |
2 |
Exons |
34357586..34360151,34361762..34361938 |
Genome context |
|
Sequence |
000001 TTAGAAGCAT ATGGAAAATG ACTATTAATA CCCTATGTAT TCTTTTCAAT AAGGTGATTA AACACAACCG TCTATAATGT 000080
000081 ACAGACCCAA CTCTCGCAAG TTCCAGGCTC TCCTGGGGTG TTCACATCCA TCATGTACTA TTTGACAAAT GTCTGCTTCA 000160 000161 ACAAGCTCCC TGTCTCCCCC AAAGGATCTG AAGGCCGTTC CAAGCGAGGG TGCTTCTGAG GACACTGAGA AGAGTTTTGC 000240 000241 CATTCTGAAG AGGCGAGCCT GTGGAACTGT TTAAGGTCCT GTTCCCAGAA GAATAAAAGT TTCTCATTAT GGCATTAAAC 000320 000321 TCTATTTATT TAGTATTTGA AACATGGTGT ACATGTATGT ATTTGTATAA ACATTTGTTA CATCTAAAAT CCACAACAGG 000400 000401 TAAACAATCT GTGCTTTCTT TTGTGTACAA GTTTGGGGTT TACATCTGGA TATTTTGGTG TTGTGGAGAC TCAGTCTGTG 000480 000481 AAGCTAATCA GATTGCCTCA TATTACCATA ATAACTGTGA CAGAAGTGAT TTGCTCCTTA AAGGGGCTGT TCCTTGCCCA 000560 000561 GAAAAGGTGT CACACTTTTG AACTAATAAA CCGGGTGTCA CGGAATCAAG AGAAACACAG CTGACACGAT GGAGAAGGTA 000640 000641 TGTGCAGGGG ACTCCTGGAG ATCCAAGTCA ATGCGTAGCA GGCAACACAA GCCATGGGGT GACGCTGGGA ATTGAGCTCT 000720 000721 CCCTTTTCAA ACTGTTGGAT GTGAATATCA AGTCTCCCCA ACCCCACCTG GAGGGGTTTC ATCCAGCAAG AGCTTGCCTT 000800 000801 CTGCTCAGCA CACTCCTGGG AGTAACCTAT GAGTGTCACA GCTGCAACTC CGAGGTGCCA ACCAAGCCCA GGGCTCTGGC 000880 000881 TTCTTCTGGG GTCAGGCCGC TCTTCAGGGT TCTTCGCACT GCAGTGGTGG TGCAGGTCAC ACCCAAAGGG ATGAGAAGAA 000960 000961 AAGGAAGTAT GAGCAGCAAG GCACAGGGCA GTCAAGACTC CAGTCCCCCC TTCTCCCCAG GGACTTCCAG AGAAGCCAGA 001040 001041 GGGTTCACAC TCTGTACCTT CCTGCTCTTG CTGAAGTGCC CTGCAGTCTG TCTGCCAGGA CAAAAGTTTG GGGCTACACA 001120 001121 GGCTGGCCTA ACAATGCCAC AGGTGCTGAT TTGGAGGGCC GAGAGGAGTG ATGCGGGCAC TTATAAAGAG GAGAGAAAGG 001200 001201 AGGAGAGGCT CACCCTCACG AGGCTTCTGA GAAGGGGGTG AACTGCAGAA GTGCAGAGGG CAGGAGAGAC CTCAGCATCT 001280 001281 ACCCAGTATG AGGAGTGTAT CAGAGCTGGG AAGGTGATTC CAGAGCAGGG GAAAATGCAA GCTCCACTAA TACAAATGAG 001360 001361 GTGAGGCAAC CAGTGCACAG CGAGGGGTTC CACAAGACCC AACAACCTCA CAAATCCAAC AGACGACCAA CAATAGCTGG 001440 001441 GGACATGCTC AAGACCCACA GAGCAAGTGC ATGAAGCCAG GGCAAGGGGC AGCAGTGAGG ACAAATCTCT CCATGAGTAC 001520 001521 TGTGGGTCTT AGCCTCAACT CACTAAAAGG CCTCTAGAGA CAATAATTAA AATAACCAGT GGCTCCTCGA GGAATGGAGG 001600 001601 CTAAGGAGCA AACTGCCAAA CTTATTCTGG CTGGAATTGG TGGCTGTTTT CTATGGAACA CACAAGACTC AAGAATGGCC 001680 001681 AATGACCACT CTCACTGGGG GGTTGCAGTT GGCAACTGGA GGGATGCTCA TATTTAACTG ACTTAGAATT GGCTTGTGTT 001760 001761 TAGCTTGGCA TGATGGTATT CCCATTGTTT AGTATTTCAA TTTCAACATC AAAATAAAGG CTGGATAAGG GTGAATGAGG 001840 001841 AGGTAGCTGC CTCACCCAAG ACAAGTCTTC ATTTGAAAGG GTGGCTAATT ACATTTTCCT TAATTTACAA ATTGTATTTG 001920 001921 ACCCACTGTG TATTTCTTTA AAGTTCGCAC AGAGTTTGGG GTATTCATTT TCAGAAGAGA AACGTTATGG ATCTGCCTTC 002000 002001 ACCCTAAATC CCTAAATCAG CCAGAGTTCC TGAGATGACC AGGGCAGGCT GTTGATCAAA GTTCAGAGAA AGTAAGCTCA 002080 002081 CCTTAATGTC TCCCCAGTTC CTTTGCCAAC TCCCCTCATC TACTCCCCAG AGGCCAGGGC CCACCTCATG CATCTGCAGG 002160 002161 CCACACCCCA TGGTCTATGC CTTCCCATCA TCCCCTAAAT ATAAGCTCAC TCAGCCTGTG GACAAAAGAT CTGAAAGACC 002240 002241 TATGTCCATG GCAGAATCAA TGGGGACTAA TACCTATTAT GAAAATAAAG GGCTCCTTCT CTTCCAGGAA TCAGCACTTG 002320 002321 GAACAGGGGT CAACATAATA TCCATCAATT GGtcaaccaa caaatgattt attgagaacc cattgtgtgc tcagcattTA 002400 002401 ACTCAAAGAA TCAAAACACA GACATCAAGT ATGGGTTTTT AGAGAGACAT GGGATATGTG GTGAGGGGTT CTCTCAAATC 002480 002481 GTGTTACTGC AACTACTGTA TTTCCAAGCC TACCTTTGGG CCCTGAAGCA ATCTATCTGT AGCTGTTCTT GCACTAGCTC 002560 002561 CTCTTTCCCC CACCCCTGAT CCCTTGGCCT CCAGACTGAA TGTTTGGCTC AACAAGACAA AATGTTTGGC TCCTAAGTCT 002640 002641 CAGCTGGAGA CAGATTACAT TCAACTGAGC AACAGAATTT GTTCTATGGG GCAGCAATAA AAATACTAGT TTGTAATAAC 002720 002721 CTTTTATGTT CTTTAAAGAC TCC |
Predicted Small Protein
Name | NONHSAT058976_smProtein_950:1240 |
Length | 97 |
Molecular weight | 10647.2275 |
Aromaticity | 0.0625 |
Instability index | 75.728125 |
Isoelectric point | 10.3616333008 |
Runs | 9 |
Runs residual | 0.040485395189 |
Runs probability | 0.0391960588039 |
Amino acid sequence | MRRKGSMSSKAQGSQDSSPPFSPGTSREARGFTLCTFLLLLKCPAVCLPGQKFGATQAGL TMPQVLIWRAERSDAGTYKEERKEERLTLTRLLRRG |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHLLLLEEELLLLLLLLLLLL LLLEEEEEEEEELLLLLLHHHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |