NONHSAT059014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059014 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3382 nt |
Genomic location |
chr18+:36786770..36807345 |
Exon number |
3 |
Exons |
36786770..36789951,36791504..36791653,36807296..36807345 |
Genome context |
|
Sequence |
000001 gtttgagcca ctgagcccag ccCAAACACA AGTATCTTAA TTACTTATTC GAATGTTTTC CCACTATATC CCACTAGAGG 000080
000081 GAGGGGAAAA AAAACAGAAA ATACAAATAA ATTGCTGTCA ATTTTGATTG GCTTTATTTT GATGTGAGTC ATTAACATTT 000160 000161 AATAAGAACT TAAAATCTAT TTTCAAAAAA TAAAacaata tagtgattaa gagttcattc tctattgtct tggtcaaatt 000240 000241 ctgtcattta ttacatgaat aatattgaca aagttgtctt tagtattcct ttctttaaaa tggaaggaat aatgttatcc 000320 000321 acttcaaaga acagtaatga ggtttaagca ttgaacacag tgcctggcct atattaaggg ctaacaaatg ttTTCTACGT 000400 000401 TACCGTTTGT TGTAATTTAC TAGAGCTTAC CActcttcct tcttcttatg tattttttct cttttccttt tcttctgctt 000480 000481 ttccttattc ttcttAACCA TAAAAATTCA ATAAATGGTA GATAAtgcca ggaaatactc taaatgcttc ttttgtatta 000560 000561 tctgacttaa tcctcaccac aatcttatag gttagtacta tcattattac aattttacaa atggaataat tgaggcacta 000640 000641 aaaaggttgc ttaacctggt tgatcactga gatagtgttt tatctgagat ttgtattcag aaagaactat gtagtcctgc 000720 000721 tcataagcac tatgccatat tgCTTCTTAC TTTAGTATTT TTAACATCAG AGCAAGGTTT TATCTTAAGT TACAATGCAA 000800 000801 CATTAAAATC TAAGTGGAAA TGAGATTTAG AGCTTTAATT TTTTAAAGGA TTGAGAAAGA AAGGAAAAAT CGTACATACC 000880 000881 AGCTTCATGG ATGAGGTGAG ATAATTAAGA GAAAGGATAC TGAAAGGCTA GAACAAATGT CCTTGAGGCT GTCTGTGTCC 000960 000961 GGTGCCTTCC CTATAAGTAA AGGCAACAAG CTCTGTCTGT CCAGACAAAC TCACTTGACT CAAGGTTATG ACTATAAAAC 001040 001041 AGGACTCCAC AACAACATAG CTGTCCATGT CCTTCCTTCT TTCGGTCAAC CTCTTCTAAT CCTGCAAGTG TGAACTTTGC 001120 001121 TTCAGCACGT GCTTCAGTCT ATGGAAACTG TCTCCTCCAA GCTCTGCATC TCACTGATTG TTCTGTTTTC ATGGAAGTCC 001200 001201 AGATGGCTGC TGGAGGTTTA CTTGAGGTCT CTTTCTGTAG GATATAGTTA TACTTTTGTC AACTCGGTGG TACATAAGTT 001280 001281 TGTTCACTCT AAAAGAAGTT GCCTTAAAAA AAAAAGCTTT CAGATGTTAG AGAGAACTGA GATGCTGATG TCAACACATG 001360 001361 AAAAATTAGA TGCTTAACAA TGCAAGAATA CTTATGGTAT AGATTTTAAC ATAATTATCA ATACATTCCT TTCAGCTATT 001440 001441 TTCTCATTTT AATTGCATAC AGTTTATGTC TTTGTTTTAT GTAGCTTTTT TTGATGAAAA GAGAATGGAA GCAGCAAGAT 001520 001521 GAAAATGAAA GAATTATGCA AAGGAACCGA AGCCTTGCCA AATACAGAAT TTGTGGTTTC TACTTTGTGC ATGATTTATG 001600 001601 CACAATTACA TTTTTCAATG TATTATCCTG CAAGCTACTT TGCTGTATAC TCCTGGTTTG TCTTTCTGGT GTCTGTGTTT 001680 001681 GGATTGAGAC AAATATGCTT CTTTTGTTTT CATTCTTGAA GCCAATAACT TTTTAGGGAG ATGTGGAATT TCTTTATTTT 001760 001761 AGATTAAGCA CTATCCGTAA TTCCTTGTAT TACATTTGGC TTGATGTTGA AGAACTTTGT CACCACTCTG GTTGGTCTCC 001840 001841 GCTGAACTTT TGCCAAGAAT AAAAGCAGAt ccacttcaaa agctgatctt ttttgctgct caagattaaa tccagaattt 001920 001921 agctggtttc tgccttagct tGGTCAACAG ATAAAGGGTC AAGACTGGAA AATTGCTTGT ACCCCTAGGA GACATGGATA 002000 002001 GGAAAAAAAG ACTGATGAGT TTTTAAGGTA CAAACAGAGA CCATCACAGC ACATTTCACC ACCTAGATTA AATAACTACT 002080 002081 AGGCTGAAGA TGGAAAGTAA AAGGGAAGTC ACATATTGAG CAAGAGATGT TACCCCAAAG TCAAAGGAAC ACTTATATGG 002160 002161 GGAAATGGAC AAATACAAGC AGGCAGACAA TCATGATTAG GGATGATATG TCAACAGGAA ATGGGATCCA GCCATCAGGC 002240 002241 TCAGCTTTAT TGCTACGACT ACAAGTCAGG AGATTATGAT CATAGCAGAA CTACAGTTCT AGAGGATGCT AAAAATGCAC 002320 002321 GCTGCCAAAT TGGTGGAGAG GTGTAGTGTT TGGCGCTGGC TTCTAGTGCA AAACTCTGTT ACCAGAAGTC TTACTCATGG 002400 002401 AGGTAAGAAA GGGAATTAAG GTATTTGAAT GAGAAAGACT GGTGTTTAGG ACAGGAAAAC ATCATCACGT TTAGATGAAC 002480 002481 AGTCAGTCGG GGAAGCATGA TGGAAAACCA TATAATGATT CTAAAAGGGC TTGGATATGT CATGTCTCAT GTCAGTATTA 002560 002561 GCCTTGGTGT TTGGAAGAGA AGCAGCATAA ATGATAGGAT TTAGTATGGC CCACTGGGAA TTTTCTAATA TTTATCTTCT 002640 002641 ACCTCCTAGA GTATGAAATC ATGACAGAAA ATATAAGCAG TTGTCTGACA TTCAATTACT AGCTGAAAAA GGAAAGCAGA 002720 002721 AACTAATGCT CTCTAATCAT ACTTTATATC ACAAATGTGA GATGattata aaacatgcaa catccatttt ctctatctgc 002800 002801 atgggcagtc tacagaactt taacaatagt atgtctcctt ctttttttct ttacctaagt ccaagtgctt caaatgtcct 002880 002881 taccctccag ttcataaatg tccTTACCCC CCAGTTCATA AATGTCCATA ATTTCTACAT CTTCTTCATC TCTATTAATA 002960 002961 ATTTTTCTAT CTTAATAACC TTGATTTTAT TGAAAAAGTG ATGAACTCAT TTTTGGTGCA TTGCCTAAGA CACAGGCTGT 003040 003041 CAAATCTTTC TTTCCAGGTA TTTTGTCCCA TTAAAATCAG TGAAAAGATT CTGTATTTTT TTTTTCCTCG TGCTCTGTGG 003120 003121 TTTTGTTCTG TTTTATTTGG AGCTCCAAAA CATACAGTTA ACCTTTATGA AAACTATTTC TTttcttctt tttttttttt 003200 003201 ttttttactt ctgctcaaag gccttccaat caatggaatc agtcccaccc agattatcta tgataatctc ttttaaagtc 003280 003281 aactgtagat gttaatcata cctacaaact actttcagag caacaccaag tttttggaac tgggtaacag gcagaggctg 003360 003361 gaacactttg gagggctgaa aa |
Predicted Small Protein
Name | NONHSAT059014_smProtein_1493:1735 |
Length | 81 |
Molecular weight | 9576.4568 |
Aromaticity | 0.1375 |
Instability index | 43.551375 |
Isoelectric point | 8.77691650391 |
Runs | 13 |
Runs residual | 0.0236842105263 |
Runs probability | 0.0418450124333 |
Amino acid sequence | MKREWKQQDENERIMQRNRSLAKYRICGFYFVHDLCTITFFNVLSCKLLCCILLVCLSGV CVWIETNMLLLFSFLKPITF |
Secondary structure | LLLLHHHHHHHHHHHHHHHHHHHHHEEEEEEEELLEEEEEHHHLLLHHHHEEEEEELLLL EEEEHHHHHHHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH HHHHHHHLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTT TTTTTTTooooooooooooo |