NONHSAT059096
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059096 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3709 nt |
Genomic location |
chr18+:42644796..42648475 |
Exon number |
1 |
Exons |
42644796..42648475 |
Genome context |
|
Sequence |
000001 CAAAAACACA ATAGAAGTCC ATTATCCCTT GATAATTATT TCTTAAAAGC AAATGGGAGT AAGTGTTCTT ATCTGGAAAA 000080
000081 ATAAATAAAT AAAATGCTCA AAGGGTATCA CCACTTCAAT TTTATCAAGC CACCTTGGAC AAAGTATCCA AATTGTGGTT 000160 000161 GCCTTAATAA ACTAAAACAT TATTGTACAT AATGTAATTA TAAATCTATC AGTCTGCATG GATGCAAACT GTGTGTGACA 000240 000241 AATCGTCTTT TAAATGGTCA ATTTCAGCTG TACATTTCTC ATCCAAGTTG TACTCTAGCC ATTGGTTTAG CGTGGACAGA 000320 000321 TACTCCATCT CTATTATCCA TTTCCACAGC CCAAATAAAA TATGTTAAGC AGGCTCAGAA TGAATATGAA GAATTCCATT 000400 000401 TCCGTAGATG TTTTCTAAAA GTCAGATTGT GGAAATTTCA AATAAGTATT TTCAATTTCC TCCCTCACTC CCTCTTACCT 000480 000481 TCCCCAAGAC ATCAAACACC TGGCATGGTA GATTATAGAA AGAGACACTG AGAGAGAGAA TTAAATTTTC TAATGGGAAT 000560 000561 TAGAATATCT GGTTTACCTC CAAATTAAGT TTCTTTACAG GAAGTTGGGA CCAGCTGGAA ATTGTATTAT CATTTCGGAA 000640 000641 CACAATATTA CTTCCTTAGA GAGAGATGGA TTTTTGTTGG CAACATAAAA GAATAAGTGA TGGGGTATCT ATGTGAGTAA 000720 000721 ATTTTTAAAT TCCAAGTTAA TATGCTTGCA AACATTACTG CTGCGTTATG GCACCAAGAG TTGGTTGAAA TTACCCACGT 000800 000801 AGTCATACTC CTGTGCTCTG TCACCATGGA CTTCACATCA TTTGCTGCCC ACTAGTTCAA TCGCATTTAA TCCTAGCAAT 000880 000881 ATGTAAGTTT AAAGGACTGC ATTCCCCTCT ACTTTAAAGC TTATATCCTA GATACTCAGT TTGTGACCTT GGTTGACCTT 000960 000961 TGGCATTTCA CGCAAGTTGA ACAGCAAAAT CAAAGCAGCC ATTTTTAATT CGTCATTCCC AAGCCCTATC TGAGTGGTTC 001040 001041 CAAAGTCACC TGAGAGGAAG GTTTAAATTA GTCCCTCTCA CCCCACCATT GCTATAAAAC AGCAACGTTT TCATTCCAAT 001120 001121 TCAGCCATAA AGAGGTTTCT CTTCTTACTG GGTTTTGAAA TCATTTCCTT TTTTCTTTCG TTTGCCCTTC TTCCTTCCTG 001200 001201 TGTTGTACTA TCTCTCCAAC CACGTCTATA AGCAGACTCA ATCTTCTTGC AGAGGAAGAT GAGCTGGCAC TCTGCAAACT 001280 001281 TCTTTAATAA GGACCCAAAG TTTACTTGAC ATTAACCTCT AGTAGGTGAG AAATTCCAAA AAAGCTTTGG GGTACATTAG 001360 001361 AATTTCCAAA GCTCTGAAAG ATATTTCAGG AGATTTAACA GCAGAGTTGC AACTTACACG TGAATTCTGG TCTATAGTGG 001440 001441 TCATGTGAGT TAAATTCGAA TCCTCTACTT GTATGACCCT AGGAATAGAT TGGAATACTG CAGAGGACCA AAGCTGAGGC 001520 001521 ATGCTAAACA GCTGCTTGGA GGTGGAAGCA AGTTCAGTCA CCTACTCAGC TTCCTCTCTC CACCACCCAG TTCCTCCCTC 001600 001601 AGTATCACAT TATTTTTTTC TTCTGCTTTT CATTAACCTA ACTCATCTCA TCAGTACAAC CATTTTCTTA TTCTCTAACT 001680 001681 ACCCCCAATT CCTTTAGCCT CTCCCCACCT GTCCAAACTC AGCTCAGCCG TGGGCCAATG CAGCTTACAG ACGGTTGCAG 001760 001761 AGCTAGGAAG AAAACCCAGC TCTCCCAACC CTGATCGTGG AGGTCTCTGG CCCCCCAACA CTGCCTTCTG GGGGCTGCAT 001840 001841 TTTTTTTTTT TTTTGAGAAG AGGTCTTTTG GGATGCATGG TGCTCCACAT ACAGCTTCAC AAAATATTTC ATTATAAGAG 001920 001921 AAACCCCTTG ATTTTTATTT CTTTTTCTTT TGTTTTCTGG ATTACCTGCC TTCAGTAAGC AGATGCAGAC CCACTTGTAA 002000 002001 GGAGTCTGGT TAGTGATGAG AAAAGGATGA AATCTAGATA CAAAAGTCAC CTTGAAGGTG ATGATGGATC TTTAATCCAC 002080 002081 TTGACTAAGT GTCTGGAAGA GCTACTTGCT CTTCCACCCC TCATCTCAAA TGAGAGGAGC AGAAGTTTAA CTTCCTCAAA 002160 002161 TAGCCCAGCT CTGGCTAAAA CCCAAAGAAG AAAGGTCAAA GGAAGGGAAA GCATGTCAGG GGCTGGTTTG TGACTTGGCA 002240 002241 GGACCAGGAA ACAGCAGCCA CTGACAGCCC AGAGAAGGTG ACTAAGGGCT GGCAGAAGAT TAGAATGTTA ATTTGGCTGC 002320 002321 TGTCCGGACT AGGAGGCCAT GTTCAATGGC AGTCAGAATT TGTGTTCTGC GCATTGCTGG GTCTATAAAT ATGATAAGCA 002400 002401 AGTGGTGACA GAATTATAGT ATAAGGTGAT GTACTACATG CAGATCATAA AGGCTTTGGT TTTAAGACTT AAGTAGAAAA 002480 002481 TCCCTCTCCT AGCTTATTAC CCAACAATAT TCAGATAATG AGCTTTTGGA GAATATCTTT TTCCTATCAC TAGAAAGATT 002560 002561 TACCTGGGAA CTGTCTAAAG TCTACACACA TATTTCCAAA GCCTTTAAAT ACCAACTGCA GCATGGAGAG AGAGGGGTGG 002640 002641 CAGAAGCTGA AATGCCTCAA AAGCCATTTA AGTGTTACGT TGCAGGATTT TCAGTCCTTC TCGTTATGTA AAAGTAGATA 002720 002721 AATATAGACG TTATTCTCAA CACTACCCTA TAGTATCACA GTGGTCCAAA TGCCAGAGCT TACAGATAAT GTCATCACAG 002800 002801 TGCCTAGAAA CTCGAACTGT AATATATCGT AGCATTTTCT TGGTGTTTCT TAAAGTTTCT TTCCACAATA CAAGGTCCTC 002880 002881 TCTGCCTCTT GTTTCTTGGA GAGTTCACCC CACTGATGAG TCTTCCTTCC CTGTTGGACT CAGTCATTTG GGGAACAGTC 002960 002961 TTAGAAGCAC ATATCAACCA AGGAAGAAAC TTCCTGGATA TCTATTGCCC ACTTGCCCAG GTCTAATAAA CACTAAAGGG 003040 003041 GGGAAATTGA AAGGAGCTGC CAACTGGTCA ACGTGGAAGG GCGGTTCCAC CCTAGATTGG TGTCTTTCTT TTTCTTCCTT 003120 003121 TTTTTAAAAA AAATCTATTT CTTAAATAAT AATAAATGCA CATGATGTGT TAAATATGTA CATATATATT TCAAAAGAAA 003200 003201 AAATGGGGCA CAAGATTGTC TTACAAGTCG TGCTGGCTAA TTTTTAGTTT GTATTCATAA GTGGTTTTTA AAAGCCTTTT 003280 003281 TTAAAGTGTA ATTTGCATGT TCTACTTTGA TTGTATGTAA ACATATTTTA GAACAAAAAA TGTATTTGTA TTTTATTGAA 003360 003361 TATAGAGGCA AGAAAATTGT ACATTGTTTG AAATGTTCCT TTTGTAACAG TTTTTATTCA TAAAGCATTT TTGTACATTT 003440 003441 AAAATGAACA TGGACTTGCT GTTATTTGAG GCGTAGATAC ATCTAGCATG CTTACTGTCA TGCTCCTCCA TGGTCTTAGA 003520 003521 TGTTGGGTTT TAAACATTTT TTTCTAAAAG AAAGCTCAGT CTTTTCCGCT ACCAGATCAG GTTAGCACAG TATAGAGCAC 003600 003601 TTAACTATTA AAAAAAAAAA GTTAATCCTA TTCATATGTT ATTCATTGTG TGAAATTAAA GACATTCAAT TCAGTCTAAA 003680 003681 AAAAAAAAAA AAAAAAAAAA AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT059096_smProtein_1520:1696 |
Length | 59 |
Molecular weight | 6575.5168 |
Aromaticity | 0.155172413793 |
Instability index | 48.4568965517 |
Isoelectric point | 5.96954345703 |
Runs | 6 |
Runs residual | 0.0531451307313 |
Runs probability | 0.0362421244774 |
Amino acid sequence | MLNSCLEVEASSVTYSASSLHHPVPPSVSHYFFLLLFINLTHLISTTIFLFSNYPQFL |
Secondary structure | LLLLEEEEEEEEEEEEELLLLLLLLLLHHHHHHHHHHHHHHHHHHHHEEELLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiii |