NONHSAT059362
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059362 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3064 nt |
Genomic location |
chr18-:52773135..52791537 |
Exon number |
3 |
Exons |
52773135..52775884,52784185..52784314,52791351..52791537 |
Genome context |
|
Sequence |
000001 GTGTTTGTCT CCTGGGATGC TGTGGGGTTG ACCCTGGATA GCATTCACGG TCATTAGCTC ATGGTGTTCT TGGGAGACAT 000080
000081 TTGAAGTCAG CTGGTGTCCT GCTGATGGAG CTGCTGAGTT CAGCATCACA TCGACATAAT TTCATGATGC GTTTGCATGA 000160 000161 AGGGCTTTGG TGCCATTTCT GAGTGAGACT TCAGAAGCCT CCTGAATCCT ATTCTGGCCC ATCGTGGCAT GGTCAGCAGA 000240 000241 TGAGAAACAG ATGGACTGGT GTGTGGTGGG AGGAAGCTGT CCTGGTCGAG CTCTGCTTCA GGCCAGTCCT TTCTGAGATT 000320 000321 GGAGAAGTGA GAAGAGGAGC AGAGAGACCA GCTGGGAGCT GCTGTAGTAA CCCAGGTGAG GGAGATGGTG GTCTGGACCA 000400 000401 GTGCTTCGCA TGGAGGTGGA CAGAAGTGAT ATAACTGATT TAAGTCAACC AGCTGCTTGA TCCAAATAAT GCCAAATGAG 000480 000481 TTTATTGCCA TCTCTTCATA TTTTACAACC AGATCACTTC TGCATAAAAC CACATGGAAG AATAAGAAGG GAAAAACAAT 000560 000561 CAAGCAATAA ACTGTTCATC TGAAAATAGT TAAATTCTCC AACAGTTGAT TTTAAAATAT TTTCCTAAAA TCTATTAAGA 000640 000641 TTTGTTCAAA GTAATTCTTC TATGGAGGCA CATCTCTGGA CTGAAACAAC CAGCCTTTGC CTTTGGTGTG GTCCTGTTTC 000720 000721 AGTCAAAATG GCTAACAGGC TATGAAGAAA ATCAAATTCC AAGTTACTCA AATGTGGAGA AAATCTGGAG GTCTGGTATG 000800 000801 GGCATCTTTT CAAAATGTTT TAATTACACA TTGATTTACA AATGACATTG TCTAGTATGG TAGTTTTAAA AAAATCATCA 000880 000881 TTTTTAAACA TCTGCCAAAT TTTAAATGGT AGTTTTTCAT GAAAGTACAA AGAAAACTTC ATCCACGATC ACGAAATTTT 000960 000961 CCAACTCATA TATCCTGATC AAAACAAAGA CTTTCTATGG ACAATTGTTG AACCACGCCT CACCTTGGAC CCTGTGCTAT 001040 001041 CTACTCTTCT CAGTGTCATT CTCTATCTAG TTTGGCTTTT CCAAATTTAA TCACTAAGAT ATTCAGATAT TATTACAAAA 001120 001121 TATTATTACA AGCCCCTTAA TTACCTTGAT AATATTACTG GCAATATTAA AAACTTTTAG CAGTATCTTT CATGGTGTGT 001200 001201 GCTTTGCCTG AAAAGGAAAG ATATCTCTGA TTAAAGTTTG AAACCATTAA TAATATAGAA CACCATACAA ATGACACCTT 001280 001281 TCCAAATTAG AAATTTTAAG ATCAAAGATT ATTTACGGGC TTATATTTGT ATCTAATTTT AACATTTTTA TGTAGAGAAG 001360 001361 AGGTCTCGCT GTACTGCACA GGCCAATCTC AAACTCCTGA CTTCAAGCTA TCCTCCTGCC TCAATCTTTT ATTTACTTTT 001440 001441 AATGCTATTC TTTGTTCACT TTGCTGAGAT ATCTAGGTCA AAGCCTAAAG GCTATGTATT TTAATTTCAA GGCTGCATGT 001520 001521 TTATATCCTC TCATACCACT AACATCCTGG CTAATGTCTT AATGACTAAT TTTTTCCAGT TTTACCACGG AATTGTCTTG 001600 001601 AAGTTGGTGC ATATTTCACA GACTCCAATC TGAAGTGTGG ATCACAGCAT TTGTTAGAAA CTAGTTGACT TTGACTCTTT 001680 001681 TTCACTCTGA GATAGAATCT AATTGGACCT GTTATCTTGA TTTTTATTGG TCAAAGCTTT CATTTCAGGC CTCCTAATAG 001760 001761 GATGCTGACC AGCCAATGGA ATGTTTGCCT TTGGTCAGGT GTTCACCCTC TGGTCCAATT AGCCGAGGCC AAAATGTAGT 001840 001841 AGGGAATTGT AGCCAAAGAA TGGATAAGGA ATTTCCTAAG GCAGTCTTGC TCAGCAGGTG CTATGTCAGT TTTTAGAAGA 001920 001921 GTTTGTGGTT GTGATAATTG CTCTAAGGGT TGGCCCATAC TGCGTATGAT CTAAGGATCT AAGAATAATT TATTACCAAA 002000 002001 GTAGCAAAAG AACTTCTTGT AAATAACCTC TGACAAATAT TTTTTATTGG CGTGTACCCT AAAGATAGCA GTACAGTGAA 002080 002081 GCTCCAGTAA CTGAAAAGAT CCTGGATTGG TATTAAGAAA TTAGAGTTAA AGGCTTATGT AACTGTCTTA TAGATAATTT 002160 002161 TAGGCAAAGC AGTCTTGAAA TAAATTCTGC TAATCAGTTA AAGAAACAGT TGAATATTTT TTAATAGCAA GAGCACTAGT 002240 002241 CTTAGAATCA GGAACCATGG GTTGGCTCTG AGACTCTCTG TCTCATCTTG GGGAAATCAT TTCAGCTTTC TGGCCCCACC 002320 002321 CGGTGTTTTC CCGGAGCCCA TAAGATGAAT GTTGTAATAG GCTACTTCTA CTTCTAAAGC ATCCTTGATC TGAAATTTGA 002400 002401 GAAACAGAAC TGAGAATCAA AATGAAATAA AAGCTTGAAT AGATGTTAGG AGACCAAAAA AAAAAAAGCC AGAGAGAAAT 002480 002481 TATTTATAGA GCATTCACTA TGATATCCCG TGCGCTTTAC ACATGTTGAC TTCTCATTCC TCAGAGAAAG GCTCTGAGGT 002560 002561 TGTATCCAGT TTACAGTAGA AAACAGGTAA GATACCTTAC CCCAGCCATA CAAACTGTAA ACAGTGGAGT CAACCCAATT 002640 002641 TTGTTTAGCG AAAAGAATAA TAAAGTGCTT TCCATCATAC CAAATTCTTC CTTAAATGCA GGGAGAAACA ATGCTTATGG 002720 002721 AAAAATAGAG GCAGGTAAAA AAAACAGTAA TGTTTTACGA AGAAATAACA GCATTTTCAC TAAATGATGT GGAGCTTGGG 002800 002801 TTGAGAATGC TGATATATGA CTCAGAATTC AAACCTTTTG CACTGATTGT TTTCACTTAG ATTTTATGAA AGCTGTAGGT 002880 002881 GTGTGAGTTA ACGAGGAATG CTTCAGCACT TCCCTGGTCA TGCATAAACA TCTACATGCA AAACAGCAAG GAGTGCTCTG 002960 002961 TTTATCACAG CTGCAGTCAA GCCAACAAAA CTGTTTCTAC CACTGAGGAT GAAATTTGTA AAATTTTCTC TCAAAAAATA 003040 003041 AAATAAGCCT CTTGTTTGAT TGCC |
Predicted Small Protein
Name | NONHSAT059362_smProtein_239:433 |
Length | 65 |
Molecular weight | 7269.14 |
Aromaticity | 0.109375 |
Instability index | 57.9640625 |
Isoelectric point | 4.76177978516 |
Runs | 9 |
Runs residual | 0.00796875 |
Runs probability | 0.0408938350114 |
Amino acid sequence | MRNRWTGVWWEEAVLVELCFRPVLSEIGEVRRGAERPAGSCCSNPGEGDGGLDQCFAWRW TEVI |
Secondary structure | LLLLLLLLEEHHHEEEEEEELLLLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLLEEEEE EEEL |
PRMN | - |
PiMo | - |