NONHSAT059518
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059518 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1479 nt |
Genomic location |
chr18+:56320675..56335416 |
Exon number |
4 |
Exons |
56320675..56320831,56327038..56327245,56327490..56328186,56335000..56335416 |
Genome context |
|
Sequence |
000001 AAAGACCTGC CCCCATGATT CAATTACCTC CCACTGGGTC CTTCCCACAA CACATGGGAA TTGTCGAAGC TACAACTCAA 000080
000081 GATGAGTTTT GGGTGAGGAC ACAGCCAAAC TATATCAATC CAGGTGTTCT GTTTCTTCCT CGTTCAATCT TGGCAGGAAA 000160 000161 GGGACCTCAG AGAACATCCA GTCCACGCTG CCCTCTGTTT AAATGTGTCT ACAGTGTACC ACACCAAGGA ACTCCCACAC 000240 000241 TCTGAATGAA CAGCCCAGTG ATCAGGAGCT TTGAATCAAT TCTTGGCACC TAACAGTTTG TGAAGAGTCT GCTAAACTCC 000320 000321 CTCTATCAGA AATCCCAGAG GACTGAGAAC AGGTCATCCT TGGAGGCTCT TTGACAAAAG TCTCCAGAAA ACTACTGAAC 000400 000401 TACACACATC AACAATAAAG AAGTCCTAAT GTCCAAAACC TTGCTTGTCA CTTTTTTGTT TGTATAATTT ATCTCCACAA 000480 000481 CTAGATCATA GGCTTCTAGA AAACATGAGT TCTGTTTTAA ATTTTGTGCC CCTTGGCAGC TGTATCTGAA TGGAGTCAGG 000560 000561 ATCTGGAAGC CCAAGTCTCC TTGTCAATGT CTGCTTGGTT CCCAAGGACA CCTGTAAATG GAAGAGGGGC ATAGTACACA 000640 000641 GAAGACATTG CTGGCAAGTG TGGTCTCTTT ACGATCAGGT GAGTCATCTG CTGAAATCTT TATAATAGAC TTCTACCTTG 000720 000721 ATGGAATGGG TTGGACTAAC GAGGAACCAC CATTACTCCA AGGCCCAGAG CAGAGCTGGG CCATCAACTG TCTCCACACT 000800 000801 TCCTGTCTTC TAGGTGCCAC CCTGATCCCT CATTGCCTTT CAGCTGCATG TCTAAATCCC CACCCCACCC CTCATCTAGT 000880 000881 TGGCTTTGAT TCCAAGGACC TAGGACTGGA GTAGGGCTTT CACAAATAAG ACAGCAGGAA TGTAATGCAA CCTAATGAGC 000960 000961 AGACTAAGAA AGCATCTATA CAGAAGAACA GACATACAAA TACCAAGGCA GATAAGAGTG ACAAAAGACA AAAAAAAAAA 001040 001041 AAAAAAAAAG AGAGAGAGAG AGATTTATCT GGTCTTTGGG TTCTCCTCTG AAGTAATTGT AACACCTTTC TGATTCCCTT 001120 001121 GTTAGTTAAT GAGTTAAAAT CTCTGATATG TGTTCATTGC ATATTTGTTG CATCATGATT TAAACTTTCT TGTAGAAACT 001200 001201 ATTCTTAAGA CCGGACGCGG TGGCTCATGC CTGTAATCCC AGCACTTTGG GAGGGCCGAC ATGGGTGAAT CACCTGAGGT 001280 001281 CAGGAGTTCA AGAGCAGCCT GGGCAACATG GTGAAACCCG TCTCTACTAA AAATACAAAA TATTAGCTGG GCGTGGTGGT 001360 001361 GTGCACCTGT AATCCCAGCT ACTCAGGAGG CTGAGACAGG AGAATCACTT GAACCTGGGA GGTGGAGGTT GCCGTGAGCC 001440 001441 GAGATCGTGC CATTGCACTC CAGCCTGGGC AACAAGAGC |
Predicted Small Protein
Name | NONHSAT059518_smProtein_617:913 |
Length | 99 |
Molecular weight | 10588.9027 |
Aromaticity | 0.0612244897959 |
Instability index | 57.2705102041 |
Isoelectric point | 4.68304443359 |
Runs | 13 |
Runs residual | 0.00638947167652 |
Runs probability | 0.0435843082902 |
Amino acid sequence | MEEGHSTQKTLLASVVSLRSGESSAEIFIIDFYLDGMGWTNEEPPLLQGPEQSWAINCLH TSCLLGATLIPHCLSAACLNPHPTPHLVGFDSKDLGLE |
Secondary structure | LLLLLLLHHHLLEEEEEELLLLLLEEEEEEEELLLLLLLLLLLLLLLLLLLHHHHHHHHH HHHHHLLLHHHHHHLLLLLLLLLLLLEEEELLLLLLLL |
PRMN | - |
PiMo | - |