NONHSAT059724
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059724 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2484 nt |
Genomic location |
chr18-:65455505..65458272 |
Exon number |
2 |
Exons |
65455505..65457409,65457694..65458272 |
Genome context |
|
Sequence |
000001 AGTGCTCCTT GGAGGGACCA TGTGAGCTGG AAGATAAGGC CATAAGTTGT CAGTAGATGT CAAACCCTTC GTTCCCAGAT 000080
000081 TAGCTGGGCC CAAGGTGGCA TGGTCACAGT CCTCAGAAGC ATATGCTTTC CTTAGCTGTG CAGCCACACA CTGTCTATTT 000160 000161 GTTCCAGAGC CAGGAGTGAC AGAGCAGAAA ATATATTCTG AAGATATAGC CTCAGGAGCT TCAACTTTCC CACCTCAGAA 000240 000241 TTTACCTTCT GAGATAACTC TTCATCCATA CGCCTATTCT CCTTTTACCC TCGACTCTAC ACAAAATGCT TGCTCAGCAC 000320 000321 CTGATCCCAG TATGATTATA ACCAACTCAG TTGTTACCAA GGTTTTCAAA CTGTGAGGCT CCAAAAGGAT TCCATGTGCC 000400 000401 ATTTTCCACA AGAAACAAAA CTCTGTTTAA GAACCAAACG ATGATGAGGA AAAAAATAAT GTGTAATGAG CAAAAGTTTG 000480 000481 ACAGTAAAAG GGCTGATGGA ACCATATCAT CTGAGACAAG ATCAGCTAAA CATTCACATC ATTAGTCCAT TCATGCTGAG 000560 000561 GACAGTTTGA AATCAAATGg caacaaaAAA CAAACAGGAA ACACAGAACC ACTGCAAAAA GTAGGTCTTC CACCAAACCT 000640 000641 GAATTTGAAT TTATCAGGTT GGATTTTCCT CAACTACAAG GTCCAGAGAA CAAAAGCAAC AACGATACAA AAGCAACCCA 000720 000721 AGTGGGGATC GGGCTACTCC ACGTGGACCA ACGTTTGTCT TCTAAGAGAA GTGGTGAATT CAGCTGACAT GTTCTCAGAG 000800 000801 GGTGAAAGAG TGGTGAAAAA CAATTATCCA AGTGAATCTG TAACTTCTGA TGCTGCTACC AACTCCCCTT CCTGTACAAG 000880 000881 AGTTATCCTG GACACCAGTG GTGATGCTGT TTGGCAGACA TTACGTATAG CACTGTCCCC AATCCCTAAA AACGGTGCTT 000960 000961 CCATGCTAAA CCTGGGTACC TATGAAGACA AGTGCTTCAT CAGCAGATCC TAAAGTTGTT AGTGTATAAT TTTTTGAAGT 001040 001041 TTTATCTTCA GATCCTTCCC ATAACAAAGG AAAACACGTT ATTCATCATG TGAAAATGTC TGAAGCATCA CATGCTGGCA 001120 001121 ACCTTGAACA AAATGAAGCC TCAGGGaaaa aaaaaaaaaa agaaagaaaa gaaaGGCAAG TTTAAATCGA AATACGAAAA 001200 001201 TCTAAATCGC ATTACGAATC CTGATAGCTC AAGAGCCACC AATAATTGAA GATGTCAAGG AGTTTCCCAA CCTGACTGCT 001280 001281 GCATCTGAAA GAAGAGAGAG TCGAGTCACC AAATTGCAAT CTAAACAGCA GCCATGGAAT AATTTTTTAA ATGGTTTAAA 001360 001361 GAAGAGCCAG ATTCCAGTAC GGCTGGGTTT GGGGAAAATG CTGACAGCAC TGAAAAAGCA GCAGCACTCG CAGTGTGCAG 001440 001441 ACCAGTGGTG TTCTCAGCCG GAGCCCTATG AGCCCTTTCC AGAGAAGCCG CGTGGGTCAG GTGAGGAGGC TCCCCGCACA 001520 001521 AGCCCTTCCA CTGCAGCATC CCCTTGAAGA AGAAGGGGAA AAAGAGAGAG GTTCCCAAGG CCATGAAGTC AACCTCACTG 001600 001601 AAGATTATGT GGCAAGAATG GCGAGAGAAA GCAGCAGCAT CTCCAAGAAA ATGCCAGGAG CCCAGCTTTT GCCAGTGATA 001680 001681 ATGCACAAAC CCAGGAGGTG GACCCCTCAG ATCCAGGGGG ATGGACTTCC CTGTCCCCTG CATTCCTGTG GCCCAGGGCA 001760 001761 GGACAGAAGA GCCGCGGGAC ACAGGACTCC AGAGGGACGC TGCAGCTTCC TTGCTCCCAA CCACTCTGCC TTTGCTAAGA 001840 001841 TTCACAGCCG CAGGTGCGGG ATCCCTGCAG CCAGAGGTTC AGTAAGGAAA TGGAAGCCTG TGTAACTGCG CCTGCTTCAA 001920 001921 TAACTGGTCC CTTTCCAAGA CCGTATGTGC CAGAAAGATC CAGCCAAAAC CAAGACCAAA GGCTGACTTG TGTAAGGACT 002000 002001 GAGTGACGTT TTCAAACATC TGGAGCTGAA AAAGTTGAAA TACATCGTTT ATCCCAGTTG TGAGAAGGTG CACAGGAAAG 002080 002081 GTGGGTTAGG GGACAGTGTG CACAACACCA TTGATGAGAC CTATGAGCAG AGCACTATTT TTTTATTTGC TCTCAACCAC 002160 002161 AGAGCTCTGC GAGGAGTTTC AACAAAGCAG ATCCTCTCAG TGTGGTGGAG AAACTTCAGC TAACAAGGGG CCCTGGACTA 002240 002241 GTTTCACAAG AGCTGAGGAT GGATCCTGGC AGGTGTGGAA GGCCAGGCTG GAGAATGTGC AAGGGGACCT CAACCTCTCC 002320 002321 AGCCCATTGC ACAGGGCTCC AGCTGCTCTG CAGAAGACAG AAAAAACAAC CACACTGCGT GGAAATCTGG AAAAATCATC 002400 002401 TGGAAGTCAG CAACCAATCT GTCCTAAAGC TACAAGAATC ATTGAAGGCT TCAACCTCCC AGATGATGAA CTTGAATTTT 002480 002481 TAAA |
Predicted Small Protein
Name | NONHSAT059724_smProtein_2258:2482 |
Length | 75 |
Molecular weight | 8412.7438 |
Aromaticity | 0.0405405405405 |
Instability index | 55.8918918919 |
Isoelectric point | 9.65899658203 |
Runs | 11 |
Runs residual | 0.00599868160844 |
Runs probability | 0.0366944484592 |
Amino acid sequence | MDPGRCGRPGWRMCKGTSTSPAHCTGLQLLCRRQKKQPHCVEIWKNHLEVSNQSVLKLQE SLKASTSQMMNLNF |
Secondary structure | LLLLLLLLLLLLEELLLLLLHHHHHHHHHHHHHHLLLLLEEEEHHHHHEELLHHHHHHHH HHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |