NONHSAT059866
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059866 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1173 nt |
Genomic location |
chr18-:71920530..71928916 |
Exon number |
3 |
Exons |
71920530..71920900,71922976..71923010,71928150..71928916 |
Genome context |
|
Sequence |
000001 TGAGTTGGGA GGTTTGTTTG ATTTTGTTTT TGGTGGTAGG AGATATGTAC TTTGAGGGAG TAAGCTTCAT TCATCTGACA 000080
000081 AGTTTATTTG CCCCGATATT TTCATCCCAT ACTTCACAAA GGCAAAGTGT CTTAGGGTCA TCAGGGAGGC CTGCCGTTAC 000160 000161 ACATGCCTGA TCCCATCCTT GTTTCCAGCT GTGGGTCAGG TTTCAGGCCC TGACTGTGGC ACTTCTGCTT CACCTGCCCA 000240 000241 CTGGGCTTCC CCCTGGCCAG CCTTTAAACA CACTGTATTT TTGACAGCTT CAGCCTGAAG TTGAAATAGT TTATGACTCT 000320 000321 AAAACTGGGA GACTGCAGGG CTTAACTGAA GATATCATAC ACGTAAGAGA TACATGCACA ATCTCAAATG GAATTTGAGA 000400 000401 GGACAGAAGG GAAGAATCAG TCTTCAGCTC CTCCCTGAAT TACGTGTCGC AATCTGAGTC TAATAAATGT GTGTGCACAT 000480 000481 CAGCATGTAC AGAGAGCTGT CATGGGTGCT GTTCGAAACT TTGGAACTCT AGATAGAAAA TATCTCTTGG CACTTAATCT 000560 000561 GCTACTAATT TTTGCTGTTA AATCAGATGG ATCAAACTTT GTGTTTAATA GCTAAATGTT GAATCTGAAA TGGTAATTAC 000640 000641 TGAATTATAA TTTTAAAAAG TCTCAAAGTC AGCATTTTGG AAGTGGTACT TTCATAGATT TTTAAATTCC ATAATGTGCC 000720 000721 TTATCTTTTC ATTGCAGGAT GACAGACCAA AGTTAAACAA GCCTCCGGAA ACTCTTATCA CTACTATTGA TTCTAGTTCC 000800 000801 AGTTGGTGGA CCAACTGGGT GATCCCTGCC ATCTCTGCAG TGGCCGTCGC CTTGATGTAT CGCCTATACA TGGCAGAGGA 000880 000881 CTGAACACCT CCTCAGAAGT CAGCGCAGGA AGAGCCTGCT TTGGACACGG GAGAAAAGAA GCCATTGCTA ACTACTTCAA 000960 000961 CTGACAGAAA CCTTCACTTG AAAACAATGA TTTTAATATA TCTCTTTCTT TTTCTTCCGA CATTAGAAAC AAAACAAAAA 001040 001041 GAACTGTCCT TTCTGCGCTC AAATTTTTCG AGTGTGCCTT TTTATTCATC TACTTTATTT TGATGTTTCC TTAATGTGTA 001120 001121 ATTTACTTAT TATAAGCATG ATCTTTTAAA AATATATTTG GCTTTTAAAG TAT |
Predicted Small Protein
Name | NONHSAT059866_smProtein_713:883 |
Length | 57 |
Molecular weight | 6403.3804 |
Aromaticity | 0.107142857143 |
Instability index | 55.1678571429 |
Isoelectric point | 4.65472412109 |
Runs | 7 |
Runs residual | 0.0282982045277 |
Runs probability | 0.0394680394681 |
Amino acid sequence | MCLIFSLQDDRPKLNKPPETLITTIDSSSSWWTNWVIPAISAVAVALMYRLYMAED |
Secondary structure | LEEEEEELLLLLLLLLLLLEEEEEELLLLLHHHHHHHHHHHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiii |