NONHSAT059878
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059878 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3454 nt |
Genomic location |
chr18-:72259010..72265071 |
Exon number |
2 |
Exons |
72259010..72261075,72263664..72265071 |
Genome context |
|
Sequence |
000001 GAAGGACTTC CGGTGGCTTC CAAGGCGACT CCGTAGTGGA TGCAGCGCCG GACGCCACAG CCGAAAAACA GAATCTTGGA 000080
000081 ACTGGTTTAG TACAATCCAG GTCGAGTTCC TTGTTTTTTA TCCGAGTGGC CGGCAGGCCC ATGTGCTGTC TTGTTTTTAA 000160 000161 CACATCAGCT CTTGCCGGAA GCCGCTAAGA GATAAAATAG GAAGTCCCAC CCTTCCCTTA GAGAAGGAAA ACGGAGAGCC 000240 000241 GAAGGAGTCA ATCTAAATTC GATGAGCGCG TCGGGCTCCA AGGCAGGCGC TGTCAGCCCG GGAGGGCTGT CTGGGATTTC 000320 000321 TAGAGGGTCC CAGAACGGGT TCTTCCCAGG CCGATCCCGC CTGCTTCCTG CCCCGTCTCT CCACCCGCCT CCCGCCCTCT 000400 000401 GTAAGGGACC CCGAGGGCGG CGCCGGAAAC ACGGAGAAGG CCCAGAACGG CGCGGGACCC GAGAGGCCTA CGTTGGCAAA 000480 000481 CGCAGCCCGC TGCCCCTTTG CTCGCTTCCC CCGGGCCTGG AGTGGCTCCT GTCGCTTCTG GCGCTCCGAT TTCGAGAAAT 000560 000561 GACTTTCAGC TGTGCAAGGC GAGAATGCTA CTTTAGATGA TGAGAAAAAA TCTCTCGAAT GGCTCCCAAA ATGAGGTCCT 000640 000641 TGTTTAAGAG GCCACAGGAA GCCGCTAGCC GAACTCTGAT ACCAAAGAGG AGGCCAAGAA GCGGACTGTG GCTTGGTGAC 000720 000721 CTGTTTGGTA TTGCCAAATT TTCAGCTTTT ATTAAAGCTG AAACACCTTG GCTGTTTAAA ACGTTCGACA AGGACTTTTT 000800 000801 TATGAACGTT AACGGCACAG CATACGGGTT TTTTGGAAAA AAAAAAAGGC AGGACTTCAG CCCGTCCGCC CCCTTGTGCA 000880 000881 GGTCCATTCA TGAACCTCGA GTTAGAGGCC TTTCTTCTGA AACTCAGAAT CTAGTAGGGA AGACCTGTGT AGACGAATAA 000960 000961 AAATAAATAC ATCACAGCTT GTTAAGTGCT GTGACAAAGA GGCAGTGAAA TCCTGCTTGA GGTCATCTGC CTTGCTAAAG 001040 001041 AGGTTTGACT ATGTTGTAGG CACAGGGTTA GGGTTAGACT CTGTAATGGG AAGTTATGTG ATCAGATTTC TGTTTAGGAA 001120 001121 GATCACTGGC CAGGCGGGGT GGCTTACGCC TGTAATCCCA ATACTTTGGG AGGCCGAGTC GGTGGATTGC TTGAGGCTAG 001200 001201 GATTTTGAGA CCAGCCTGGG GAAACCGCGT CTCTACTAAA AATTTGAAAT TAGCCAGGCA TGGTGGTGCG AGCCTGTAAT 001280 001281 TCCAGCTACT TGGAGGCTGA GGCGGGAGAA TAGCTTGAAC CCAGTGGCGG AGGCTGCAGT GAGCCGAGAT TGCGCCACTG 001360 001361 CACTCCAGCC TGGGCGACAG AGCGAGATTC CGTCTCAAAA AAATCATTCC AACGAGTGGA TAAAGAAAAT GTGATATATA 001440 001441 TGCACTATGG AATACTAAGC CATAAGAAGG AATGAAATAA TGGCATTTGC AGCAACCTAG ATGGAGTTGG AGACCATTAT 001520 001521 TCTAAGTGAA GTAACTCAAG AATGGAAAAC CAAATATTGT ATGTTCTCAC TCGTAAGTGG GAGCTAAGCT GCGAAGATGC 001600 001601 AAAGGCATAA GAATGATATA GTGGACTTTG AGGACTCAAG GGTTGAAGGA TGAGACTACA CATTGGGTAC AGTGTGCACT 001680 001681 GCTTGGGTGA TGAGTGCACC AAAATCTCAG AACTCACCAC TGAAGAACTT CCCCATGTAA CCAAAAACCA CCTGTTCCAC 001760 001761 AGAAACTATC GAAATAACAT TTTTAAAACT TTACTATTTC TGAATAAAAT TTACATACAT TTCTCAGAAA AAAAAATATT 001840 001841 TGGAATTGAG GTATCTAATA GAGAACTGAG TTAAATTATT GCCACTTAAA AACACAAAGT GATATAGCCA CTTTATGAAT 001920 001921 TAATCAGTCA GCAGTGGCTA GGTTATGCTT AGTGGTTTAT AACCAAATCT TAGTTTATAA CAACAAATGT GTATTGTTAA 002000 002001 TTCCCACTAC AAGTTTATAA CGACATTGCT GGATGCTACA CTCCATGTCT CTTTGTGGGA CCCAGGCTCA TGGGACTTCT 002080 002081 GTTACCTGCA TTAGAGAGAG AGAAGACAAC AAAATATGCA CTGGTTCTTG AAGCTTTGGC CCAGAAGTAA AATATGTCTT 002160 002161 TTACCTGTTC ACATTGCATT GGGCCAGGGC AATTATCATG GCTGCAAGTA ACTTCAAAAG GATGGGGAAG TGCGATCTTG 002240 002241 GCATGTGTCA GAAGAAATGA AAACATTTGG TGAAGAGCAT TAATGACTGT CTTTACAGGA AAAAAGCAAT CAAATAGACA 002320 002321 TGATTGCTTG TTTCAGTTTC ATCATTTCCT ACTGTGTTAC CTAAACTTTC TGAGCCCCAG TTTCTTATTA CTAAAATAAA 002400 002401 ATAAAGATGA TATTCACTTC AAGGACTTTG TGTTAACTAG GGTAAAAAAA TTGAAAACTA GTAAGTTATG CAAATTAGAA 002480 002481 ATGTATAATA TTACTGCTTT GAAAGTGATG GTGAAATGTA GAATAATTGG AAGGATAACA CAAAGCACTT ATACCAGGAG 002560 002561 GCTTTTAGCT GCAGATAATA GAAATGAACC TCCACTACTT TAATCAATAA AAAAGTGTAT CAGCTCACAA ATTTGTCATC 002640 002641 CAGACATAAA GGAGGCTTCA GAATTTATTG ACTCAGGAGT TGAATGTTGG TATCAAGGAC CTAGATTTTT CTCATCACTC 002720 002721 TGCACTTCAA TTCTCAATGC CCTATTGAAC ATCAGGCTGT AGTAAGATGG CTAGAGTGAT TCCAGGGATA ACATCTAGAG 002800 002801 ATAAAAAAGA GAACTCCTTT TCTTATGATT TTTTTCTTAA GAGAAAAGGA ATTTCCCAAA AGCCCCCAGC AAGCATGCCT 002880 002881 TCACATCCCA TGGCCAGAAG TGGCTCACAT GTGTACCCTG AGCTAAGCAC TGCAGACAGG AATGGAATCG CCTGTAGGCC 002960 002961 TCAGAGACCA CCTGGATCTT GGGAAGGTGT CAGCTCTACC TGTGGCACTT GGCTGAGTGG GAAAGGGATG GAAACATGAA 003040 003041 TAAAGTAAGA ATTAGGAAGG AAAAGGAGAA ATGGATCCAG GGTATGAAGC CAATAGTTTA GTTATCTCAA CAAATATGAT 003120 003121 TGATTTCATC TTTATGAATG TGATGACCTA ATTTAATACA TTCAATCAAT GAAGTAAAAA AAAGTGCAAG GACAATATGA 003200 003201 CATCTGTCAT TCTCTGTTGA GATTTGAGAG GTAATAATAC CAAGAACGTG TGGTGACCTG GGTCCTCACT GCTACTGTCT 003280 003281 TCCTGTACCT GGACACTTCT AGCAAGAGAC TTCAACTTCA GAACAAAGAG GATCCCAACT TGTAGCTGCA TTATACACAC 003360 003361 CCCAGCAGCA CACATAAGTT GATTTCTAAT TATTCCTCTT TAAGAAATTG TTTGTGGAAT ATTTATCTAT TTATAAATGG 003440 003441 AAAAATAGAA AATT |
Predicted Small Protein
Name | NONHSAT059878_smProtein_1649:1873 |
Length | 75 |
Molecular weight | 8818.0888 |
Aromaticity | 0.108108108108 |
Instability index | 50.022972973 |
Isoelectric point | 8.66607666016 |
Runs | 11 |
Runs residual | 0.00599868160844 |
Runs probability | 0.0370397135104 |
Amino acid sequence | MRLHIGYSVHCLGDECTKISELTTEELPHVTKNHLFHRNYRNNIFKTLLFLNKIYIHFSE KKIFGIEVSNRELS |
Secondary structure | LEEEEEEEEEELLLLLLLLLLLLLLLLLLLLLLLHHHLLHHHHHHHHHHHHLLEEEEELL LEEEEEEEELLLLL |
PRMN | - |
PiMo | - |