NONHSAT060514
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT060514 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
881 nt |
Genomic location |
chr19+:3473933..3475000 |
Exon number |
2 |
Exons |
3473933..3474647,3474835..3475000 |
Genome context |
|
Sequence |
000001 ccaagatcac agcattgcat tccagcctgg gtgacagagc gagactccat ctcaaataaa agagaaaTGG TCATTGTTCA 000080
000081 GGGTAAGGTC CAGGGCCTGG AGAAGGTGAG GGGAAGCAGG AGAACAGAAA CTGGGAAAAG GAAGTGCTAG TCCCTTTCCA 000160 000161 AGATATTGCA GGGCCCTGGG GCACCCCCAC CCTCCAAGAT ACAGCTCCCA GGAAAAAAGT CACGTGCCCC AAAACAAAGT 000240 000241 GAGGTGGGGG AAGGAGCAAA GATTTGCTTG GAGACGGCGC TCAGGGCTCA AAGTCCAGGG CTCAGGACAG CAAAAAACCA 000320 000321 GATTGCCGGG GGAGTGTTTA ATCTGCTCAG GGCGTCTGGG CACCTGTGCA CCCTGAGCCT CCATATCATC CGCCCAGCCA 000400 000401 TCGCCCGCAG CCCCAAAAGC AGCCTCCTTC CCCAGAGGTA AACTGAGTCC CAAGAGATGA CAGGAGCCCT TCCAAAGGGC 000480 000481 TGTTACGAAT GCTTTAATGC AGGCCATTGG GAAGCAGCTC TCAGCTGGCA GTGGGTGCAT GGGAGAGGGG AAGTTCTGTT 000560 000561 CAGTAGACAT CAGGCAGAGA GAAAAGAAAT CAGGCAGTGG GGAGAAGCAG GTGGAGCCAT GAGATCGTGG AGGATTGCGG 000640 000641 GTGTCTCCTC AACCAGGGAT GCTCTCCGAG TATAAGAAGA ATCACCAGGC AGGGACCAAG CTCAGGAAGA GGGGTGAATC 000720 000721 TTCACATGAC TGTGCTCTTT GCTCTCTCAT GGTCTCCGGG CTCTTTTTCC TCCAGATCCA GTCCCAAGTT GCtctctcct 000800 000801 tcctttgctg tctttttctc cttcttcctc ttctcttctt tctccttggc ctctttcttc tctctctTGT CTTCACTGTA 000880 000881 G |
Predicted Small Protein
Name | NONHSAT060514_smProtein_725:880 |
Length | 52 |
Molecular weight | 5598.42 |
Aromaticity | 0.235294117647 |
Instability index | 64.6960784314 |
Isoelectric point | 11.0003051758 |
Runs | 5 |
Runs residual | 0.0562026790914 |
Runs probability | 0.0357887299063 |
Amino acid sequence | MTVLFALSWSPGSFSSRSSPKLLSPSFAVFFSFFLFSSFSLASFFSLLSSL |
Secondary structure | LEEEEEEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooo |