NONHSAT060607
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT060607 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4598 nt |
Genomic location |
chr19-:4445004..4449601 |
Exon number |
1 |
Exons |
4445004..4449601 |
Genome context |
|
Sequence |
000001 CACGCTTCCC TTGGCTGGTG TGCTGTCCCG GGCGCTCTGA TCCCAAGGAA GCTGTTGTCT TGGGGACATG CCCATCTGGC 000080
000081 AGCTCTGCCT CTCTGCATCC ACGTGCTCTG TCCCGCTCCC CACATCATCT CAGCAACTAA ACCGGCAGAC TGGGCCGGGT 000160 000161 CCCAATTTTC AGTTGGCATG AGCCCCGGCT CAGTGTGTAG GTCATTGGTC CGTGTGACGC AGGGGGCTGC TGAGGGACCC 000240 000241 TGCTGTGCAG TTGAGGGTGG GGGGTGGTGG GTGGAGCTCT GGGCTGCCTG GGCAGGTGGC CCGAATCCTG ACACATGGCC 000320 000321 CTGGGCTGCC CTTCTGTTCA CCCGCCCTCG TCTGGGCAGC CCAGGGAGGT GCGGGTGGCA GCCCTGCTTC CCAGGCCATG 000400 000401 GGTGGCTCTC TGGGTGTGGC CGTGTGTGAT GGCTGTGCCG AGCGTGGATT TGTGCCCCAA TCTTTTCCAG GTCTTAGGGT 000480 000481 ACGTACTGTT CTCAGCCTCT CCATGCTGGG ACGCTGTTCG CAGTCAGCAG GGCTGGTTCT GGGAAACCCC CAGAGTTCCA 000560 000561 GCTATGACTT CTCCCCTCCC CCGGTAACAT AGGTGGATAG GTGGGACCTC GGGGAGGGGC AGGGGCTGGG GGTATCCGTC 000640 000641 TTCCAGCTAT TGAGTTTCAG ACATTGAGGG TTGCAGACTC ATTTGTGTCC TCTCTGCCAC CTGCCATCCC TGTGACCCTG 000720 000721 GACGATGGGC CTCTCGGTCT CTTTGTAAAC ATGAGGCCCG GGAGTGGTTC CAGAACGTCC ATCATGGGGC TGCGAGAGCA 000800 000801 GGAGGGATGG GGCGTCCATG GTGGCGGGAG GTTCTGTAAG TGGCGGTGGC CTTGATGGAT CTCAGCACTG AGGTCGAGTT 000880 000881 CTAAAGCCAG AGTGTGAGGC ACAGTTCTGT CGCGTCACAC TGGCTTCCAA GTCCCATGGA TCTAGCCTTG AGAAGGCGGA 000960 000961 AGGGGAGACT TGAGTTCTGC TGGGTCTTGG CTGCGTCGCC TCTGCCCTGG GGCGTGGGCA GGGCTGCGGT CTTGGAGGGT 001040 001041 CTCTCTTTTC CTTTCTGTGA TGAGCGCACA GCTGGGGCCG CTCCAAGCCG CTGTTCTGCC TTCCTTTTCC TGCCCCTGTT 001120 001121 ACCTGGGCAG CGGAGGGCCG TGCGGCCCGG GCTCTCAGTG AGTGGCTTTC CCTGCTTCCC TCCTCCCAGC ACTTCTCCAC 001200 001201 CGACCCAGTG GCCGCCTCCA TCATGAAGAT CTACACGTTC AACAAAGACC AGGACCGGGT GAAGCTGGGT GTGGACACCA 001280 001281 TTGCCAAGTG AGCGTGTGGC CCCTTTGCCC TGCCTGGCCC CTCCAGCTCA TCCCAGCACC CCTCCCACTG GGGCTGTCAC 001360 001361 CCCCTCTGGC CCCCTCATTA CCTGCTGAGG TGGGTTGGGA AGGAGCATAG GCCGAGAGTG AGGCAGCTCC ACCCAGAggc 001440 001441 ctcaggcaaa gggctgggcc tccttgggcc tcagtttacc cgtgtgcaaa atgaaggtgt tgaaGGAATC AGGGGTTTCC 001520 001521 CACCCTGGCT TCCTTGGGGA ACATGTGGAG GAGGCAGGGT CCCACCCCAC TCCCCGGGTC TCAGGATCGG GGGCAGGCCT 001600 001601 GGAGGTCCAC GCTGCCCGCC AACGCCGAGG GAGCACCCCG CAGGAGCCCC CTGCTGGCAC TGCGGCCCTT CAGCTCTGGC 001680 001681 TCTCCACTCT TCCGGCACTG TGGCTTCCCC ACCGCTGTGG TTAATTGTGC CCTTCCAGGG CTGGTGGGAC GGTGAGGGGT 001760 001761 TCCGTGGGGC TCCTGCTGGC ACCAGGGGTG GGCTCCATGG GGTGTCCGAG GTGTGCCTTC CACCCGGAGA TGGTCTGCTG 001840 001841 CCCTCGCGTC ACTGGGCCGC TTCTTCCCTC TGACTAGAGG CCAAGTGTGG CTGAGCTGCT GTTACCTGGA GCAGGAGGCA 001920 001921 CAGAGGGGCC GGGTGGGCAG CCTGGGCTGT GCCCCACTCA CCTTCTCCAC CTACCCCAGG TACCTGGACA ACATCCACCT 002000 002001 GCACCCCGAG GAGGAGAAGT ACCGGAAGAT CAAGCTGCAG AACAAGGTGT TTCAGGTGGG CGTGCCTTCT GGCCCCCGGG 002080 002081 GCCCAGGCTG GGGGTGGGGG CAGCTGGCCT GCAGGAGCCG GTGGTGGCCC ACACCAGGCG GTGGGCTCCC TGGAGGAGCT 002160 002161 AGCGAGAGTT GAGCCACAAG CAGTGAAGGG TTCGGCCAGT AGAAGGTAGC AGGACAAGAT GGAGAGCAAG ACTTTTATGC 002240 002241 ACCGGTCACC CCAAATCAAC AAATTCTGCC TCTCCTCACC TGCATCCTTT TCCTCCTCTT CAGCTGGGCT TGTTTGGGAA 002320 002321 CATGTCGACT CTGGGGAGGT TTCTCATGCA AACCAGATGT CTGGTTCTTC TGGGGGAAAG GGCAGGGACT GGGGTCCTGG 002400 002401 GCGGTGTTAG CCTCGCATCA GGCCCCAGCA GTGTCTGGCT CCTCAGCCTC ACTCTTCGTG CCTGGTTGTG ACTCTTTCCT 002480 002481 CTGTGCAGAG CTGTTGGAGA CTCCACAGCC CCCACCGTAG AAAAGCAGGT TTGCATCCAG CACTGAGGCA CCCCCAGGGC 002560 002561 TGGGCCCCAT CCAGGGGTCG ACAGCTGCTC CCAATAGCGA GAGCCGGGCC CCTGGACTGG GTGGGGTGTG GCCAGGCCAT 002640 002641 GGAGGAAGCC AGGGGCCCCC AGTGACGCCC ATCTCCACCC CCAGGAGCGC ATTAACTGCC TGGAAGGGAC CCACGAGTTT 002720 002721 TTTGAGGCCA TTGGGTTCCA GAAGGTGTTG CTTCCCGCCC AGGATCAGGG TAAGTGGACA GGGCCTGGCT GAGTAGGGAA 002800 002801 TGGGGACGAG GGGCCTCGGG GCAGGAGGGC CCGGCTTGGG GGTCTCTCCA TTGCACAGTG ACACCCATGT CCTGCCACGC 002880 002881 TGTAGAGGAC CCCGAGGAGT TCTACGTGCT GAGCGAGACC ACCTTGGCCC AGCCCCAGAG CCTGGAGAGG CACAAGGAAC 002960 002961 AGCTGCTGGC TGCGGAGCCC GTGCGCGCCA AGCTGGACAG GCAGCGCCGC GTCTTCCAGC CCTCGCCCCT GGCCTCGCAG 003040 003041 TTCGAACTGC CTGGGGACTT CTTCAACCTC ACAGCAGAGG AGATCAAGCG GGAGCAGAGG CTCAGGTGGG CCTGACGTCC 003120 003121 GCGGAGCAGA GTGGGGCGGG GCGGGGTGGA AGAACCCCGG CCAGCCCTCG TGACCTGGCC CGCGTGTGCA GGTCCGAGGC 003200 003201 GGTGGAGCGG CTGAGCGTGC TGCGGACCAA GGCCATGCGG GAGAAGGAGG AGCAGCGGGG GCTGCGCAAG TACAACTACA 003280 003281 CGCTGCTGCG CGTGCGCCTC CCCGATGGCT GCCTCCTGCA GGGTGGGCAC CAACGATGCC CGTGGAGGGC GGCTCGGGTT 003360 003361 GGTAGGGGGC CCTGGGCCCC ACCCGCTCTG ACTCCCCCAC TCCCCAGGCA CTTTCTACGC TCGGGAGCGG CTGGGGGCGG 003440 003441 TGTACGGGTT CGTCCGGGAG GCCCTGCAGA GCGACTGGCT GCCTTTTGAG CTGCTGGCCT CGGGAGGGCA GAAGCTGTCC 003520 003521 GAGGACGAGA ACCTGGCCTT GAACGAGTGC GGGCTGGTGA GTGTCGGCCC GCAGGAGCAC CGCTGACCCG ATGCCTCTGC 003600 003601 AGGTTCTCCT GGGACCGGCA CAGACACCCC CAGGAGGGAG CCTCCTTGTT CTCagagcag ggggcctggg caggtccctg 003680 003681 ggtttgaatc ctgctttccc acttactggc agcagggcct cgagcaagtt cataactact ccacgcctca gtttccccat 003760 003761 caaatgggAG CGGTGACGTG CGTTAGCTAG TGCAGTAGGT TTAGGCTTAG GTCCTGGAGT CCCGGAGGGA GAGGGCAGGA 003840 003841 GGCCTGGGTG CGAGCCACAG CCTCCACCAG CTGAGATGGC TTCCAGGCCG GGGCATCCCC GCGCCCAGGT TGCCCGCTGA 003920 003921 GTTCCCTGCC GCGGCAAGGG CCGACTCTCG GTCTCAGAGT GACGGCCTAC CCCTACCGCA GGTGCCCTCT GCCCTCCTGA 004000 004001 CCTTCTCGTG GGACATGGCT GTGCTGGAGG ACATCAAGGC CGCGGGGGCC GAGCCGGACT CCATCCTGAA ACCCGAGCTC 004080 004081 CTGTCAGCCA TCGAGAAGCT CTTGTGAAAT AAAAGCAGGG TTGGCCTCAG CCCTGTGGGT CTGTCTCATG CTCTCCCTGT 004160 004161 TCCTCTCCCC GCCACCCCAG GGCCTCCAAG CCACCTCTGG AAATACTTGG CTCTGCCCCA TGGGCACGGG AGGGGCGCCA 004240 004241 GCCGTGGAGC TGTGGAATTG GGCCCCGTGG CAGAGCCCCC ATCCCTTGGG GGCTGTGGGG ATGCGCCCAA GCCCCCGAGG 004320 004321 GAGAGGCCTG GGGACACCAA CAAATCTAAG CCCTCCCTAG CTGCTTGGTA ACTGTGTCAT GAAGCTGCCG GACAGACACA 004400 004401 CGTGGCATCT CCCTGGGCAG GAGAGCAGGC CTGCAGCATG GGTCCTGTTC CCGTGTGCCG TGGGTGGCAG TGGCTGCACC 004480 004481 TGGCACTAGG GCTGCTCTGT GGATGTGGGT GACAACGGCA GGAGGGGATG CTGGCCTTCC TGCACATAGA CCTGCAGTTA 004560 004561 GTAAATCATA AGCCCAAATA AACAGGTTGT TTGAATAT |
Predicted Small Protein
Name | NONHSAT060607_smProtein_935:1225 |
Length | 97 |
Molecular weight | 10376.0199 |
Aromaticity | 0.104166666667 |
Instability index | 73.053125 |
Isoelectric point | 10.5408325195 |
Runs | 9 |
Runs residual | 0.040485395189 |
Runs probability | 0.0381754303322 |
Amino acid sequence | MDLALRRRKGRLEFCWVLAASPLPWGVGRAAVLEGLSFPFCDERTAGAAPSRCSAFLFLP LLPGQRRAVRPGLSVSGFPCFPPPSTSPPTQWPPPS |
Secondary structure | LLHHHHHHLLLEEEEEEEELLLLLLLLLHHHHHHLLLLLLLLLLLLLLLLLLLLLEEELL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |